Strain Fitness in Xanthobacter sp. DMC5 around GFF1570

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1569 and GFF1570 are separated by 21 nucleotidesGFF1570 and GFF1571 are separated by 94 nucleotides GFF1569 - hypothetical protein, at 213,677 to 214,648 GFF1569 GFF1570 - Proline/betaine transporter, at 214,670 to 215,983 GFF1570 GFF1571 - hypothetical protein, at 216,078 to 217,184 GFF1571 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.745 kb on - strandat 213.843 kb on + strand, within GFF1569at 213.866 kb on + strand, within GFF1569at 213.866 kb on + strand, within GFF1569at 213.867 kb on - strand, within GFF1569at 213.867 kb on - strand, within GFF1569at 213.926 kb on + strand, within GFF1569at 213.926 kb on + strand, within GFF1569at 213.926 kb on + strand, within GFF1569at 213.926 kb on + strand, within GFF1569at 213.927 kb on - strand, within GFF1569at 213.927 kb on - strand, within GFF1569at 213.927 kb on - strand, within GFF1569at 213.989 kb on + strand, within GFF1569at 213.989 kb on + strand, within GFF1569at 214.211 kb on + strand, within GFF1569at 214.211 kb on + strand, within GFF1569at 214.212 kb on - strand, within GFF1569at 214.368 kb on - strand, within GFF1569at 214.368 kb on - strand, within GFF1569at 214.542 kb on - strand, within GFF1569at 214.571 kb on + strandat 214.571 kb on + strandat 214.571 kb on + strandat 214.572 kb on - strandat 214.572 kb on - strandat 214.572 kb on - strandat 214.572 kb on - strandat 214.572 kb on - strandat 214.581 kb on - strandat 214.581 kb on - strandat 214.581 kb on - strandat 214.601 kb on + strandat 214.601 kb on + strandat 214.749 kb on + strandat 214.749 kb on + strandat 214.750 kb on - strandat 214.843 kb on - strand, within GFF1570at 214.882 kb on - strand, within GFF1570at 215.181 kb on + strand, within GFF1570at 215.182 kb on - strand, within GFF1570at 215.196 kb on + strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.197 kb on - strand, within GFF1570at 215.199 kb on + strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.200 kb on - strand, within GFF1570at 215.747 kb on + strand, within GFF1570at 215.851 kb on - strand, within GFF1570at 215.865 kb on + strandat 216.014 kb on + strandat 216.217 kb on + strand, within GFF1571at 216.274 kb on + strand, within GFF1571at 216.274 kb on + strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.275 kb on - strand, within GFF1571at 216.439 kb on + strand, within GFF1571at 216.440 kb on - strand, within GFF1571at 216.442 kb on + strand, within GFF1571at 216.554 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.577 kb on + strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.578 kb on - strand, within GFF1571at 216.646 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.712 kb on + strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.713 kb on - strand, within GFF1571at 216.898 kb on + strand, within GFF1571at 216.899 kb on - strand, within GFF1571at 216.917 kb on + strand, within GFF1571at 216.917 kb on + strand, within GFF1571at 216.918 kb on - strand, within GFF1571at 216.918 kb on - strand, within GFF1571at 216.933 kb on + strand, within GFF1571at 216.934 kb on - strand, within GFF1571

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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213,745 - +1.2
213,843 + GFF1569 0.17 -0.3
213,866 + GFF1569 0.19 -1.3
213,866 + GFF1569 0.19 +0.6
213,867 - GFF1569 0.20 -0.1
213,867 - GFF1569 0.20 -0.4
213,926 + GFF1569 0.26 +0.5
213,926 + GFF1569 0.26 +1.4
213,926 + GFF1569 0.26 +0.5
213,926 + GFF1569 0.26 -0.4
213,927 - GFF1569 0.26 +0.8
213,927 - GFF1569 0.26 -1.2
213,927 - GFF1569 0.26 -0.0
213,989 + GFF1569 0.32 +0.5
213,989 + GFF1569 0.32 +0.6
214,211 + GFF1569 0.55 +0.2
214,211 + GFF1569 0.55 +0.1
214,212 - GFF1569 0.55 +0.2
214,368 - GFF1569 0.71 +0.4
214,368 - GFF1569 0.71 +0.1
214,542 - GFF1569 0.89 -1.1
214,571 + -0.6
214,571 + -0.3
214,571 + -0.3
214,572 - +1.4
214,572 - +0.7
214,572 - +1.0
214,572 - -0.9
214,572 - -0.5
214,581 - -1.1
214,581 - -2.1
214,581 - +0.8
214,601 + -0.6
214,601 + +0.7
214,749 + +0.0
214,749 + +1.2
214,750 - -2.3
214,843 - GFF1570 0.13 -1.2
214,882 - GFF1570 0.16 -1.0
215,181 + GFF1570 0.39 +0.2
215,182 - GFF1570 0.39 -0.8
215,196 + GFF1570 0.40 -0.4
215,197 - GFF1570 0.40 -0.6
215,197 - GFF1570 0.40 +0.2
215,197 - GFF1570 0.40 +0.4
215,199 + GFF1570 0.40 -0.0
215,200 - GFF1570 0.40 -0.2
215,200 - GFF1570 0.40 -0.6
215,200 - GFF1570 0.40 -0.0
215,747 + GFF1570 0.82 -0.7
215,851 - GFF1570 0.90 -0.0
215,865 + -0.5
216,014 + +0.1
216,217 + GFF1571 0.13 +1.1
216,274 + GFF1571 0.18 -0.6
216,274 + GFF1571 0.18 -0.9
216,275 - GFF1571 0.18 -1.4
216,275 - GFF1571 0.18 +0.4
216,275 - GFF1571 0.18 -1.2
216,275 - GFF1571 0.18 +0.4
216,275 - GFF1571 0.18 -0.4
216,275 - GFF1571 0.18 -0.9
216,275 - GFF1571 0.18 +0.3
216,439 + GFF1571 0.33 +0.4
216,440 - GFF1571 0.33 -0.0
216,442 + GFF1571 0.33 -0.6
216,554 + GFF1571 0.43 +0.5
216,577 + GFF1571 0.45 +0.4
216,577 + GFF1571 0.45 -0.8
216,577 + GFF1571 0.45 +0.6
216,577 + GFF1571 0.45 +0.1
216,577 + GFF1571 0.45 -0.1
216,577 + GFF1571 0.45 +0.9
216,577 + GFF1571 0.45 +2.6
216,578 - GFF1571 0.45 +0.0
216,578 - GFF1571 0.45 +0.1
216,578 - GFF1571 0.45 -2.0
216,578 - GFF1571 0.45 +0.3
216,646 + GFF1571 0.51 +0.9
216,712 + GFF1571 0.57 +1.4
216,712 + GFF1571 0.57 -0.0
216,712 + GFF1571 0.57 +1.9
216,713 - GFF1571 0.57 -0.5
216,713 - GFF1571 0.57 -0.3
216,713 - GFF1571 0.57 +0.4
216,713 - GFF1571 0.57 -0.3
216,713 - GFF1571 0.57 -0.6
216,898 + GFF1571 0.74 -0.8
216,899 - GFF1571 0.74 -0.1
216,917 + GFF1571 0.76 +0.2
216,917 + GFF1571 0.76 -0.3
216,918 - GFF1571 0.76 +0.4
216,918 - GFF1571 0.76 -0.7
216,933 + GFF1571 0.77 +0.2
216,934 - GFF1571 0.77 -0.7

Or see this region's nucleotide sequence