Strain Fitness in Xanthobacter sp. DMC5 around GFF1546

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1544 and GFF1545 are separated by 13 nucleotidesGFF1545 and GFF1546 are separated by 55 nucleotidesGFF1546 and GFF1547 are separated by 655 nucleotides GFF1544 - hypothetical protein, at 184,367 to 184,705 GFF1544 GFF1545 - Cobalt-containing nitrile hydratase subunit alpha, at 184,719 to 185,345 GFF1545 GFF1546 - Cobalt-containing nitrile hydratase subunit beta, at 185,401 to 186,075 GFF1546 GFF1547 - Aliphatic amidase expression-regulating protein, at 186,731 to 187,852 GFF1547 Position (kb) 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 184.401 kb on + strand, within GFF1544at 184.485 kb on + strand, within GFF1544at 184.489 kb on - strand, within GFF1544at 184.575 kb on + strand, within GFF1544at 184.576 kb on - strand, within GFF1544at 184.576 kb on - strand, within GFF1544at 184.695 kb on + strandat 184.695 kb on + strandat 184.695 kb on + strandat 184.695 kb on + strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.696 kb on - strandat 184.697 kb on + strandat 184.828 kb on + strand, within GFF1545at 184.828 kb on + strand, within GFF1545at 184.829 kb on - strand, within GFF1545at 184.957 kb on + strand, within GFF1545at 185.281 kb on + strand, within GFF1545at 185.282 kb on - strand, within GFF1545at 185.285 kb on - strandat 185.285 kb on - strandat 185.285 kb on - strandat 185.437 kb on - strandat 185.502 kb on - strand, within GFF1546at 185.549 kb on + strand, within GFF1546at 185.550 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.556 kb on - strand, within GFF1546at 185.567 kb on + strand, within GFF1546at 185.568 kb on - strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.714 kb on + strand, within GFF1546at 185.721 kb on - strand, within GFF1546at 185.721 kb on - strand, within GFF1546at 185.876 kb on + strand, within GFF1546at 185.876 kb on + strand, within GFF1546at 185.877 kb on - strand, within GFF1546at 185.886 kb on - strand, within GFF1546at 186.270 kb on + strandat 186.271 kb on - strandat 186.271 kb on - strandat 186.405 kb on + strandat 186.406 kb on - strandat 186.527 kb on + strandat 186.530 kb on + strandat 186.530 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.641 kb on + strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.642 kb on - strandat 186.699 kb on - strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.752 kb on + strandat 186.872 kb on + strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.873 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.875 kb on - strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.929 kb on + strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 186.930 kb on - strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.037 kb on + strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.038 kb on - strand, within GFF1547at 187.063 kb on + strand, within GFF1547at 187.064 kb on - strand, within GFF1547at 187.064 kb on - strand, within GFF1547

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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184,401 + GFF1544 0.10 +1.4
184,485 + GFF1544 0.35 +0.5
184,489 - GFF1544 0.36 -0.2
184,575 + GFF1544 0.61 +1.6
184,576 - GFF1544 0.62 -0.8
184,576 - GFF1544 0.62 +0.1
184,695 + -0.6
184,695 + +0.9
184,695 + -0.1
184,695 + -1.7
184,696 - +0.3
184,696 - -0.6
184,696 - -0.4
184,696 - -0.7
184,696 - +1.1
184,696 - -0.6
184,696 - -0.4
184,697 + -0.4
184,828 + GFF1545 0.17 +0.3
184,828 + GFF1545 0.17 -1.8
184,829 - GFF1545 0.18 -1.5
184,957 + GFF1545 0.38 +0.3
185,281 + GFF1545 0.90 -0.1
185,282 - GFF1545 0.90 +0.1
185,285 - -0.8
185,285 - +0.1
185,285 - +0.5
185,437 - -0.8
185,502 - GFF1546 0.15 +0.1
185,549 + GFF1546 0.22 -0.1
185,550 - GFF1546 0.22 +1.0
185,556 - GFF1546 0.23 +2.3
185,556 - GFF1546 0.23 +0.8
185,556 - GFF1546 0.23 +0.6
185,556 - GFF1546 0.23 +0.4
185,567 + GFF1546 0.25 -0.2
185,568 - GFF1546 0.25 +0.1
185,714 + GFF1546 0.46 -0.3
185,714 + GFF1546 0.46 -1.0
185,714 + GFF1546 0.46 +0.2
185,714 + GFF1546 0.46 -0.5
185,721 - GFF1546 0.47 -0.1
185,721 - GFF1546 0.47 -0.2
185,876 + GFF1546 0.70 -0.0
185,876 + GFF1546 0.70 +0.6
185,877 - GFF1546 0.71 -1.4
185,886 - GFF1546 0.72 +0.3
186,270 + -0.1
186,271 - -0.6
186,271 - -0.3
186,405 + +0.8
186,406 - -0.0
186,527 + +0.5
186,530 + -0.5
186,530 + +0.3
186,641 + +1.7
186,641 + -0.3
186,641 + +1.0
186,641 + -0.0
186,641 + -0.4
186,641 + +0.3
186,642 - -0.3
186,642 - -0.3
186,642 - -0.4
186,642 - -1.2
186,642 - +0.2
186,699 - -0.6
186,752 + -0.7
186,752 + -0.9
186,752 + -1.6
186,752 + +1.3
186,872 + GFF1547 0.13 +0.3
186,873 - GFF1547 0.13 -0.5
186,873 - GFF1547 0.13 +0.3
186,873 - GFF1547 0.13 +1.1
186,875 - GFF1547 0.13 +0.6
186,875 - GFF1547 0.13 -1.2
186,875 - GFF1547 0.13 -0.5
186,875 - GFF1547 0.13 -0.8
186,929 + GFF1547 0.18 -0.4
186,929 + GFF1547 0.18 -0.2
186,930 - GFF1547 0.18 -0.9
186,930 - GFF1547 0.18 -0.7
186,930 - GFF1547 0.18 +0.0
186,930 - GFF1547 0.18 -1.6
187,037 + GFF1547 0.27 +0.3
187,037 + GFF1547 0.27 -1.4
187,037 + GFF1547 0.27 +0.4
187,037 + GFF1547 0.27 -0.4
187,038 - GFF1547 0.27 -0.2
187,038 - GFF1547 0.27 +0.4
187,063 + GFF1547 0.30 +0.3
187,064 - GFF1547 0.30 -2.4
187,064 - GFF1547 0.30 -0.9

Or see this region's nucleotide sequence