Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1524 and GFF1525 overlap by 4 nucleotides GFF1525 and GFF1526 overlap by 1 nucleotides GFF1526 and GFF1527 overlap by 8 nucleotides GFF1527 and GFF1528 are separated by 13 nucleotides
GFF1524 - High-affinity branched-chain amino acid transport system permease protein LivH, at 164,165 to 165,049
GFF1524
GFF1525 - hypothetical protein, at 165,046 to 165,927
GFF1525
GFF1526 - Lipopolysaccharide export system ATP-binding protein LptB, at 165,927 to 166,697
GFF1526
GFF1527 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 166,690 to 167,418
GFF1527
GFF1528 - putative sulfate transporter, at 167,432 to 169,147
GFF1528
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.942 kb on + strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 164.943 kb on - strand, within GFF1524 at 165.079 kb on + strand at 165.197 kb on - strand, within GFF1525 at 165.208 kb on + strand, within GFF1525 at 165.323 kb on - strand, within GFF1525 at 165.323 kb on - strand, within GFF1525 at 165.323 kb on - strand, within GFF1525 at 165.412 kb on + strand, within GFF1525 at 165.412 kb on + strand, within GFF1525 at 165.412 kb on + strand, within GFF1525 at 165.413 kb on - strand, within GFF1525 at 165.413 kb on - strand, within GFF1525 at 165.413 kb on - strand, within GFF1525 at 165.413 kb on - strand, within GFF1525 at 165.472 kb on + strand, within GFF1525 at 165.472 kb on + strand, within GFF1525 at 165.700 kb on + strand, within GFF1525 at 165.701 kb on - strand, within GFF1525 at 166.090 kb on - strand, within GFF1526 at 166.411 kb on + strand, within GFF1526 at 166.412 kb on - strand, within GFF1526 at 166.552 kb on + strand, within GFF1526 at 166.553 kb on - strand, within GFF1526 at 166.674 kb on + strand at 166.674 kb on + strand at 166.674 kb on + strand at 166.993 kb on + strand, within GFF1527 at 166.994 kb on - strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.041 kb on + strand, within GFF1527 at 167.042 kb on - strand, within GFF1527 at 167.080 kb on + strand, within GFF1527 at 167.081 kb on - strand, within GFF1527 at 167.296 kb on + strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.297 kb on - strand, within GFF1527 at 167.298 kb on - strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.302 kb on + strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.303 kb on - strand, within GFF1527 at 167.380 kb on + strand at 167.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 164,942 + GFF1524 0.88 +0.8 164,942 + GFF1524 0.88 +0.4 164,942 + GFF1524 0.88 -0.5 164,942 + GFF1524 0.88 -0.4 164,942 + GFF1524 0.88 +0.1 164,943 - GFF1524 0.88 -0.7 164,943 - GFF1524 0.88 -0.2 164,943 - GFF1524 0.88 -2.1 164,943 - GFF1524 0.88 -0.6 164,943 - GFF1524 0.88 -0.2 165,079 + -0.1 165,197 - GFF1525 0.17 +0.4 165,208 + GFF1525 0.18 +0.4 165,323 - GFF1525 0.31 +1.0 165,323 - GFF1525 0.31 +0.2 165,323 - GFF1525 0.31 +0.7 165,412 + GFF1525 0.41 -1.0 165,412 + GFF1525 0.41 -0.9 165,412 + GFF1525 0.41 -1.6 165,413 - GFF1525 0.42 -1.3 165,413 - GFF1525 0.42 +0.3 165,413 - GFF1525 0.42 +1.3 165,413 - GFF1525 0.42 +1.0 165,472 + GFF1525 0.48 -0.0 165,472 + GFF1525 0.48 +0.0 165,700 + GFF1525 0.74 +0.5 165,701 - GFF1525 0.74 -0.3 166,090 - GFF1526 0.21 +0.6 166,411 + GFF1526 0.63 +0.7 166,412 - GFF1526 0.63 +0.8 166,552 + GFF1526 0.81 -0.1 166,553 - GFF1526 0.81 +0.0 166,674 + -0.3 166,674 + -1.4 166,674 + -1.4 166,993 + GFF1527 0.42 +0.2 166,994 - GFF1527 0.42 -0.6 167,041 + GFF1527 0.48 +2.1 167,041 + GFF1527 0.48 -0.1 167,041 + GFF1527 0.48 -0.5 167,042 - GFF1527 0.48 +0.4 167,080 + GFF1527 0.53 -0.8 167,081 - GFF1527 0.54 +0.2 167,296 + GFF1527 0.83 -0.2 167,297 - GFF1527 0.83 +0.3 167,297 - GFF1527 0.83 +0.9 167,297 - GFF1527 0.83 -0.7 167,297 - GFF1527 0.83 +0.1 167,297 - GFF1527 0.83 +0.3 167,297 - GFF1527 0.83 -0.2 167,297 - GFF1527 0.83 +2.0 167,297 - GFF1527 0.83 -0.0 167,297 - GFF1527 0.83 -0.6 167,298 - GFF1527 0.83 -0.8 167,302 + GFF1527 0.84 +1.3 167,302 + GFF1527 0.84 -0.2 167,302 + GFF1527 0.84 -0.5 167,303 - GFF1527 0.84 -0.5 167,303 - GFF1527 0.84 -0.1 167,303 - GFF1527 0.84 -0.3 167,303 - GFF1527 0.84 +0.1 167,303 - GFF1527 0.84 -1.0 167,303 - GFF1527 0.84 -0.0 167,380 + -0.7 167,381 - -0.4
Or see this region's nucleotide sequence