Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1500 and GFF1501 are separated by 218 nucleotides GFF1501 and GFF1502 overlap by 4 nucleotides GFF1502 and GFF1503 overlap by 4 nucleotides
GFF1500 - L-fuculose phosphate aldolase, at 138,719 to 139,507
GFF1500
GFF1501 - Riboflavin-binding protein RibY, at 139,726 to 140,748
GFF1501
GFF1502 - hypothetical protein, at 140,745 to 141,551
GFF1502
GFF1503 - Riboflavin transport system permease protein RibX, at 141,548 to 142,300
GFF1503
Position (kb) 139
140
141 Strain fitness (log2 ratio) -2
-1
0
1
2 at 138.845 kb on + strand, within GFF1500 at 138.845 kb on + strand, within GFF1500 at 138.846 kb on - strand, within GFF1500 at 138.846 kb on - strand, within GFF1500 at 138.903 kb on - strand, within GFF1500 at 138.903 kb on - strand, within GFF1500 at 139.139 kb on + strand, within GFF1500 at 139.139 kb on + strand, within GFF1500 at 139.164 kb on - strand, within GFF1500 at 139.164 kb on - strand, within GFF1500 at 139.299 kb on - strand, within GFF1500 at 139.299 kb on - strand, within GFF1500 at 139.301 kb on + strand, within GFF1500 at 139.302 kb on - strand, within GFF1500 at 139.740 kb on + strand at 139.740 kb on + strand at 139.740 kb on + strand at 139.741 kb on - strand at 139.741 kb on - strand at 139.741 kb on - strand at 139.876 kb on + strand, within GFF1501 at 139.876 kb on + strand, within GFF1501 at 139.876 kb on + strand, within GFF1501 at 139.876 kb on + strand, within GFF1501 at 139.897 kb on + strand, within GFF1501 at 139.898 kb on - strand, within GFF1501 at 139.898 kb on - strand, within GFF1501 at 139.900 kb on + strand, within GFF1501 at 139.900 kb on + strand, within GFF1501 at 140.305 kb on + strand, within GFF1501 at 140.306 kb on - strand, within GFF1501 at 140.899 kb on - strand, within GFF1502 at 140.953 kb on - strand, within GFF1502 at 141.177 kb on + strand, within GFF1502 at 141.187 kb on - strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.429 kb on + strand, within GFF1502 at 141.430 kb on - strand, within GFF1502 at 141.430 kb on - strand, within GFF1502 at 141.495 kb on + strand at 141.496 kb on - strand at 141.655 kb on + strand, within GFF1503 at 141.655 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.728 kb on + strand, within GFF1503 at 141.729 kb on - strand, within GFF1503 at 141.729 kb on - strand, within GFF1503 at 141.729 kb on - strand, within GFF1503
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 138,845 + GFF1500 0.16 +0.0 138,845 + GFF1500 0.16 +1.8 138,846 - GFF1500 0.16 +0.6 138,846 - GFF1500 0.16 -1.3 138,903 - GFF1500 0.23 -2.2 138,903 - GFF1500 0.23 -0.7 139,139 + GFF1500 0.53 -0.8 139,139 + GFF1500 0.53 -0.2 139,164 - GFF1500 0.56 -0.7 139,164 - GFF1500 0.56 +1.0 139,299 - GFF1500 0.74 +0.3 139,299 - GFF1500 0.74 -0.2 139,301 + GFF1500 0.74 +0.1 139,302 - GFF1500 0.74 -0.7 139,740 + -0.3 139,740 + -0.9 139,740 + -0.6 139,741 - +0.0 139,741 - +0.6 139,741 - -1.0 139,876 + GFF1501 0.15 +0.5 139,876 + GFF1501 0.15 -1.5 139,876 + GFF1501 0.15 -0.0 139,876 + GFF1501 0.15 +0.9 139,897 + GFF1501 0.17 -0.1 139,898 - GFF1501 0.17 +0.5 139,898 - GFF1501 0.17 -0.9 139,900 + GFF1501 0.17 +1.0 139,900 + GFF1501 0.17 -1.1 140,305 + GFF1501 0.57 +1.6 140,306 - GFF1501 0.57 -0.3 140,899 - GFF1502 0.19 -0.9 140,953 - GFF1502 0.26 +1.1 141,177 + GFF1502 0.54 -0.4 141,187 - GFF1502 0.55 +0.3 141,429 + GFF1502 0.85 -0.2 141,429 + GFF1502 0.85 +0.5 141,429 + GFF1502 0.85 -1.2 141,429 + GFF1502 0.85 +0.3 141,430 - GFF1502 0.85 +0.3 141,430 - GFF1502 0.85 -0.1 141,495 + +0.7 141,496 - -0.1 141,655 + GFF1503 0.14 -0.3 141,655 + GFF1503 0.14 +1.9 141,728 + GFF1503 0.24 -0.3 141,728 + GFF1503 0.24 +0.1 141,728 + GFF1503 0.24 +1.1 141,728 + GFF1503 0.24 -1.1 141,729 - GFF1503 0.24 -0.7 141,729 - GFF1503 0.24 +0.2 141,729 - GFF1503 0.24 -0.1
Or see this region's nucleotide sequence