Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF145 and GFF146 are separated by 3 nucleotides GFF146 and GFF147 are separated by 149 nucleotides GFF147 and GFF148 are separated by 4 nucleotides GFF148 and GFF149 are separated by 67 nucleotides
GFF145 - Soluble epoxide hydrolase, at 155,886 to 156,779
GFF145
GFF146 - hypothetical protein, at 156,783 to 157,352
GFF146
GFF147 - hypothetical protein, at 157,502 to 157,771
GFF147
GFF148 - DNA damage-inducible protein F, at 157,776 to 159,098
GFF148
GFF149 - hypothetical protein, at 159,166 to 159,516
GFF149
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -2
-1
0
1 at 156.777 kb on + strand at 157.108 kb on + strand, within GFF146 at 157.203 kb on + strand, within GFF146 at 157.436 kb on + strand at 157.466 kb on + strand at 157.467 kb on - strand at 157.471 kb on + strand at 157.703 kb on + strand, within GFF147 at 157.804 kb on + strand at 157.805 kb on - strand at 157.805 kb on - strand at 158.178 kb on + strand, within GFF148 at 158.178 kb on + strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.179 kb on - strand, within GFF148 at 158.181 kb on + strand, within GFF148 at 158.181 kb on + strand, within GFF148 at 158.223 kb on + strand, within GFF148 at 158.224 kb on - strand, within GFF148 at 158.405 kb on + strand, within GFF148 at 158.406 kb on - strand, within GFF148 at 158.411 kb on - strand, within GFF148 at 158.411 kb on - strand, within GFF148 at 158.769 kb on + strand, within GFF148 at 158.770 kb on - strand, within GFF148 at 158.770 kb on - strand, within GFF148 at 158.841 kb on + strand, within GFF148 at 158.841 kb on + strand, within GFF148 at 158.841 kb on + strand, within GFF148 at 158.850 kb on + strand, within GFF148 at 158.904 kb on + strand, within GFF148 at 158.904 kb on + strand, within GFF148 at 158.905 kb on - strand, within GFF148 at 159.255 kb on - strand, within GFF149 at 159.410 kb on + strand, within GFF149 at 159.410 kb on + strand, within GFF149 at 159.411 kb on - strand, within GFF149 at 159.411 kb on - strand, within GFF149 at 159.494 kb on + strand at 159.495 kb on - strand at 159.551 kb on + strand at 159.719 kb on + strand at 159.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 156,777 + +1.0 157,108 + GFF146 0.57 +0.3 157,203 + GFF146 0.74 -0.5 157,436 + -0.0 157,466 + -0.8 157,467 - +0.5 157,471 + +0.3 157,703 + GFF147 0.74 -0.5 157,804 + -0.5 157,805 - -0.7 157,805 - +0.1 158,178 + GFF148 0.30 +0.5 158,178 + GFF148 0.30 +1.1 158,179 - GFF148 0.30 +0.3 158,179 - GFF148 0.30 -0.5 158,179 - GFF148 0.30 +0.8 158,181 + GFF148 0.31 +0.3 158,181 + GFF148 0.31 -0.3 158,223 + GFF148 0.34 -1.3 158,224 - GFF148 0.34 -0.7 158,405 + GFF148 0.48 +0.1 158,406 - GFF148 0.48 -2.5 158,411 - GFF148 0.48 +0.8 158,411 - GFF148 0.48 +0.1 158,769 + GFF148 0.75 -0.6 158,770 - GFF148 0.75 -0.6 158,770 - GFF148 0.75 -0.6 158,841 + GFF148 0.80 +1.5 158,841 + GFF148 0.80 +0.4 158,841 + GFF148 0.80 +0.6 158,850 + GFF148 0.81 -0.7 158,904 + GFF148 0.85 +0.0 158,904 + GFF148 0.85 -2.0 158,905 - GFF148 0.85 +0.7 159,255 - GFF149 0.25 -1.0 159,410 + GFF149 0.70 +0.0 159,410 + GFF149 0.70 -1.4 159,411 - GFF149 0.70 +0.1 159,411 - GFF149 0.70 -0.5 159,494 + +0.3 159,495 - +0.8 159,551 + -0.6 159,719 + +0.5 159,720 - +0.1
Or see this region's nucleotide sequence