Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1461 and GFF1462 are separated by 297 nucleotides GFF1462 and GFF1463 are separated by 21 nucleotides
GFF1461 - NADPH-dependent FMN reductase ArsH, at 100,238 to 100,960
GFF1461
GFF1462 - hypothetical protein, at 101,258 to 102,403
GFF1462
GFF1463 - Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain, at 102,425 to 103,696
GFF1463
Position (kb) 101
102
103 Strain fitness (log2 ratio) -2
-1
0
1
2 at 100.305 kb on + strand at 100.389 kb on + strand, within GFF1461 at 100.390 kb on - strand, within GFF1461 at 100.390 kb on - strand, within GFF1461 at 100.392 kb on + strand, within GFF1461 at 100.434 kb on + strand, within GFF1461 at 100.435 kb on - strand, within GFF1461 at 100.758 kb on + strand, within GFF1461 at 100.758 kb on + strand, within GFF1461 at 100.759 kb on - strand, within GFF1461 at 100.824 kb on + strand, within GFF1461 at 100.824 kb on + strand, within GFF1461 at 100.825 kb on - strand, within GFF1461 at 100.825 kb on - strand, within GFF1461 at 100.849 kb on - strand, within GFF1461 at 100.934 kb on + strand at 100.997 kb on + strand at 100.998 kb on - strand at 101.115 kb on - strand at 101.206 kb on + strand at 101.208 kb on + strand at 101.208 kb on + strand at 101.257 kb on + strand at 101.360 kb on + strand at 101.361 kb on - strand at 101.375 kb on + strand, within GFF1462 at 101.375 kb on + strand, within GFF1462 at 101.376 kb on - strand, within GFF1462 at 101.376 kb on - strand, within GFF1462 at 101.406 kb on - strand, within GFF1462 at 101.406 kb on - strand, within GFF1462 at 101.483 kb on + strand, within GFF1462 at 101.484 kb on - strand, within GFF1462 at 101.597 kb on + strand, within GFF1462 at 101.597 kb on + strand, within GFF1462 at 101.598 kb on - strand, within GFF1462 at 101.598 kb on - strand, within GFF1462 at 101.598 kb on - strand, within GFF1462 at 101.598 kb on - strand, within GFF1462 at 101.598 kb on - strand, within GFF1462 at 101.654 kb on + strand, within GFF1462 at 101.654 kb on + strand, within GFF1462 at 101.655 kb on - strand, within GFF1462 at 101.655 kb on - strand, within GFF1462 at 101.655 kb on - strand, within GFF1462 at 101.732 kb on + strand, within GFF1462 at 101.733 kb on - strand, within GFF1462 at 101.925 kb on - strand, within GFF1462 at 102.116 kb on + strand, within GFF1462 at 102.117 kb on - strand, within GFF1462 at 102.389 kb on + strand at 102.389 kb on + strand at 102.390 kb on - strand at 102.390 kb on - strand at 102.395 kb on + strand at 102.401 kb on + strand at 102.457 kb on - strand at 102.621 kb on + strand, within GFF1463 at 102.621 kb on + strand, within GFF1463 at 102.621 kb on + strand, within GFF1463 at 102.621 kb on + strand, within GFF1463 at 102.622 kb on - strand, within GFF1463 at 102.888 kb on + strand, within GFF1463 at 102.985 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.055 kb on - strand, within GFF1463 at 103.113 kb on + strand, within GFF1463 at 103.281 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.320 kb on + strand, within GFF1463 at 103.321 kb on - strand, within GFF1463
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 100,305 + +0.1 100,389 + GFF1461 0.21 -1.9 100,390 - GFF1461 0.21 +1.5 100,390 - GFF1461 0.21 -1.1 100,392 + GFF1461 0.21 -0.7 100,434 + GFF1461 0.27 -1.2 100,435 - GFF1461 0.27 +0.2 100,758 + GFF1461 0.72 -0.9 100,758 + GFF1461 0.72 +0.4 100,759 - GFF1461 0.72 +0.9 100,824 + GFF1461 0.81 -2.3 100,824 + GFF1461 0.81 +0.0 100,825 - GFF1461 0.81 -0.3 100,825 - GFF1461 0.81 -1.5 100,849 - GFF1461 0.85 +0.1 100,934 + +1.0 100,997 + +0.1 100,998 - -0.4 101,115 - -0.2 101,206 + -0.3 101,208 + +0.7 101,208 + +0.9 101,257 + +0.1 101,360 + +0.4 101,361 - +0.4 101,375 + GFF1462 0.10 -1.5 101,375 + GFF1462 0.10 +0.3 101,376 - GFF1462 0.10 -0.6 101,376 - GFF1462 0.10 -0.3 101,406 - GFF1462 0.13 -0.7 101,406 - GFF1462 0.13 -0.6 101,483 + GFF1462 0.20 -1.2 101,484 - GFF1462 0.20 -1.1 101,597 + GFF1462 0.30 -0.7 101,597 + GFF1462 0.30 +0.3 101,598 - GFF1462 0.30 -0.2 101,598 - GFF1462 0.30 -0.7 101,598 - GFF1462 0.30 -1.2 101,598 - GFF1462 0.30 -1.8 101,598 - GFF1462 0.30 -1.0 101,654 + GFF1462 0.35 +0.3 101,654 + GFF1462 0.35 -1.1 101,655 - GFF1462 0.35 -0.1 101,655 - GFF1462 0.35 -0.1 101,655 - GFF1462 0.35 -0.1 101,732 + GFF1462 0.41 +0.6 101,733 - GFF1462 0.41 -1.1 101,925 - GFF1462 0.58 +0.7 102,116 + GFF1462 0.75 +0.0 102,117 - GFF1462 0.75 -0.2 102,389 + +0.6 102,389 + +1.9 102,390 - +0.3 102,390 - +0.3 102,395 + -0.7 102,401 + +0.3 102,457 - +0.0 102,621 + GFF1463 0.15 -0.8 102,621 + GFF1463 0.15 +2.0 102,621 + GFF1463 0.15 +0.5 102,621 + GFF1463 0.15 -0.7 102,622 - GFF1463 0.15 +1.3 102,888 + GFF1463 0.36 -0.3 102,985 - GFF1463 0.44 +0.4 103,055 - GFF1463 0.50 -0.7 103,055 - GFF1463 0.50 +0.8 103,055 - GFF1463 0.50 -0.6 103,113 + GFF1463 0.54 -0.4 103,281 + GFF1463 0.67 +0.1 103,320 + GFF1463 0.70 +1.0 103,320 + GFF1463 0.70 +0.5 103,320 + GFF1463 0.70 -0.8 103,321 - GFF1463 0.70 -1.0
Or see this region's nucleotide sequence