Strain Fitness in Xanthobacter sp. DMC5 around GFF1441

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1439 and GFF1440 overlap by 4 nucleotidesGFF1440 and GFF1441 overlap by 8 nucleotidesGFF1441 and GFF1442 overlap by 4 nucleotides GFF1439 - Ribose import permease protein RbsC, at 61,798 to 62,772 GFF1439 GFF1440 - Ribose import permease protein RbsC, at 62,769 to 63,734 GFF1440 GFF1441 - Galactose/methyl galactoside import ATP-binding protein MglA, at 63,727 to 65,277 GFF1441 GFF1442 - putative FAD-linked oxidoreductase, at 65,274 to 66,698 GFF1442 Position (kb) 63 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 63.073 kb on + strand, within GFF1440at 63.073 kb on + strand, within GFF1440at 63.073 kb on + strand, within GFF1440at 63.074 kb on - strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.151 kb on + strand, within GFF1440at 63.152 kb on - strand, within GFF1440at 63.152 kb on - strand, within GFF1440at 63.172 kb on + strand, within GFF1440at 63.173 kb on - strand, within GFF1440at 63.196 kb on + strand, within GFF1440at 63.196 kb on + strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.197 kb on - strand, within GFF1440at 63.251 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.556 kb on - strand, within GFF1440at 63.819 kb on - strandat 64.478 kb on + strand, within GFF1441at 64.859 kb on + strand, within GFF1441at 64.859 kb on + strand, within GFF1441at 64.860 kb on - strand, within GFF1441at 65.057 kb on + strand, within GFF1441at 65.448 kb on - strand, within GFF1442at 65.448 kb on - strand, within GFF1442at 65.448 kb on - strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.655 kb on + strand, within GFF1442at 65.656 kb on - strand, within GFF1442at 65.656 kb on - strand, within GFF1442at 65.656 kb on - strand, within GFF1442at 65.656 kb on - strand, within GFF1442at 65.704 kb on + strand, within GFF1442at 65.705 kb on - strand, within GFF1442at 65.827 kb on + strand, within GFF1442at 65.827 kb on + strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.828 kb on - strand, within GFF1442at 65.991 kb on + strand, within GFF1442at 65.991 kb on + strand, within GFF1442at 66.090 kb on + strand, within GFF1442at 66.113 kb on - strand, within GFF1442at 66.113 kb on - strand, within GFF1442at 66.113 kb on - strand, within GFF1442

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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63,073 + GFF1440 0.31 +0.6
63,073 + GFF1440 0.31 +0.9
63,073 + GFF1440 0.31 +0.0
63,074 - GFF1440 0.32 +0.4
63,151 + GFF1440 0.40 +0.6
63,151 + GFF1440 0.40 +0.6
63,151 + GFF1440 0.40 +0.2
63,151 + GFF1440 0.40 -0.3
63,151 + GFF1440 0.40 -0.2
63,152 - GFF1440 0.40 +0.5
63,152 - GFF1440 0.40 -0.9
63,172 + GFF1440 0.42 -0.2
63,173 - GFF1440 0.42 +1.5
63,196 + GFF1440 0.44 +0.4
63,196 + GFF1440 0.44 -1.2
63,197 - GFF1440 0.44 -1.0
63,197 - GFF1440 0.44 -0.8
63,197 - GFF1440 0.44 -0.2
63,197 - GFF1440 0.44 -0.1
63,251 - GFF1440 0.50 +0.2
63,556 - GFF1440 0.81 +0.2
63,556 - GFF1440 0.81 -0.2
63,556 - GFF1440 0.81 +0.4
63,556 - GFF1440 0.81 -1.8
63,819 - +0.3
64,478 + GFF1441 0.48 -0.6
64,859 + GFF1441 0.73 +0.8
64,859 + GFF1441 0.73 -1.0
64,860 - GFF1441 0.73 +0.1
65,057 + GFF1441 0.86 -0.1
65,448 - GFF1442 0.12 -0.2
65,448 - GFF1442 0.12 -0.1
65,448 - GFF1442 0.12 +0.1
65,655 + GFF1442 0.27 -0.7
65,655 + GFF1442 0.27 +0.1
65,655 + GFF1442 0.27 -0.1
65,655 + GFF1442 0.27 -1.2
65,655 + GFF1442 0.27 -0.5
65,655 + GFF1442 0.27 -0.5
65,656 - GFF1442 0.27 +0.3
65,656 - GFF1442 0.27 +0.6
65,656 - GFF1442 0.27 -0.6
65,656 - GFF1442 0.27 +1.1
65,704 + GFF1442 0.30 -0.6
65,705 - GFF1442 0.30 +1.1
65,827 + GFF1442 0.39 -2.0
65,827 + GFF1442 0.39 -0.2
65,828 - GFF1442 0.39 -0.3
65,828 - GFF1442 0.39 -1.1
65,828 - GFF1442 0.39 -0.1
65,828 - GFF1442 0.39 +0.3
65,828 - GFF1442 0.39 +0.5
65,828 - GFF1442 0.39 +0.3
65,828 - GFF1442 0.39 -0.4
65,828 - GFF1442 0.39 -0.5
65,991 + GFF1442 0.50 -1.0
65,991 + GFF1442 0.50 -0.5
66,090 + GFF1442 0.57 -0.0
66,113 - GFF1442 0.59 +0.0
66,113 - GFF1442 0.59 -0.1
66,113 - GFF1442 0.59 +0.1

Or see this region's nucleotide sequence