Strain Fitness in Xanthobacter sp. DMC5 around GFF1289

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1287 and GFF1288 are separated by 2 nucleotidesGFF1288 and GFF1289 are separated by 32 nucleotidesGFF1289 and GFF1290 are separated by 43 nucleotidesGFF1290 and GFF1291 are separated by 4 nucleotides GFF1287 - Acetyl-CoA:oxalate CoA-transferase, at 1,395,720 to 1,396,880 GFF1287 GFF1288 - hypothetical protein, at 1,396,883 to 1,397,257 GFF1288 GFF1289 - hypothetical protein, at 1,397,290 to 1,397,475 GFF1289 GFF1290 - hypothetical protein, at 1,397,519 to 1,397,911 GFF1290 GFF1291 - hypothetical protein, at 1,397,916 to 1,398,713 GFF1291 Position (kb) 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1396.403 kb on - strand, within GFF1287at 1396.404 kb on + strand, within GFF1287at 1396.413 kb on + strand, within GFF1287at 1396.436 kb on + strand, within GFF1287at 1396.918 kb on + strandat 1396.918 kb on + strandat 1396.919 kb on - strandat 1396.919 kb on - strandat 1396.968 kb on + strand, within GFF1288at 1396.968 kb on + strand, within GFF1288at 1396.968 kb on + strand, within GFF1288at 1396.968 kb on + strand, within GFF1288at 1396.969 kb on - strand, within GFF1288at 1396.969 kb on - strand, within GFF1288at 1397.205 kb on + strand, within GFF1288at 1397.205 kb on + strand, within GFF1288at 1397.205 kb on + strand, within GFF1288at 1397.291 kb on + strandat 1397.292 kb on - strandat 1397.292 kb on - strandat 1397.375 kb on + strand, within GFF1289at 1397.376 kb on - strand, within GFF1289at 1397.415 kb on - strand, within GFF1289at 1397.415 kb on - strand, within GFF1289at 1397.415 kb on - strand, within GFF1289at 1397.702 kb on - strand, within GFF1290at 1397.712 kb on + strand, within GFF1290at 1397.713 kb on - strand, within GFF1290at 1397.822 kb on - strand, within GFF1290at 1397.822 kb on - strand, within GFF1290at 1398.011 kb on - strand, within GFF1291at 1398.011 kb on - strand, within GFF1291at 1398.159 kb on + strand, within GFF1291at 1398.160 kb on - strand, within GFF1291at 1398.160 kb on - strand, within GFF1291at 1398.229 kb on + strand, within GFF1291at 1398.229 kb on + strand, within GFF1291at 1398.242 kb on + strand, within GFF1291at 1398.242 kb on + strand, within GFF1291at 1398.243 kb on - strand, within GFF1291at 1398.337 kb on + strand, within GFF1291at 1398.422 kb on + strand, within GFF1291at 1398.422 kb on + strand, within GFF1291at 1398.433 kb on + strand, within GFF1291at 1398.433 kb on + strand, within GFF1291at 1398.433 kb on + strand, within GFF1291at 1398.434 kb on - strand, within GFF1291at 1398.434 kb on - strand, within GFF1291at 1398.434 kb on - strand, within GFF1291at 1398.434 kb on - strand, within GFF1291at 1398.473 kb on + strand, within GFF1291at 1398.473 kb on + strand, within GFF1291at 1398.473 kb on + strand, within GFF1291at 1398.474 kb on - strand, within GFF1291

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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1,396,403 - GFF1287 0.59 -0.3
1,396,404 + GFF1287 0.59 +0.2
1,396,413 + GFF1287 0.60 -0.9
1,396,436 + GFF1287 0.62 -0.4
1,396,918 + +0.4
1,396,918 + +0.1
1,396,919 - +0.3
1,396,919 - -0.1
1,396,968 + GFF1288 0.23 -0.2
1,396,968 + GFF1288 0.23 +0.3
1,396,968 + GFF1288 0.23 +0.3
1,396,968 + GFF1288 0.23 -0.7
1,396,969 - GFF1288 0.23 +0.1
1,396,969 - GFF1288 0.23 +0.3
1,397,205 + GFF1288 0.86 -0.7
1,397,205 + GFF1288 0.86 +0.7
1,397,205 + GFF1288 0.86 -0.0
1,397,291 + -2.2
1,397,292 - +0.9
1,397,292 - -0.2
1,397,375 + GFF1289 0.46 -1.0
1,397,376 - GFF1289 0.46 -0.7
1,397,415 - GFF1289 0.67 -0.6
1,397,415 - GFF1289 0.67 -0.8
1,397,415 - GFF1289 0.67 -1.1
1,397,702 - GFF1290 0.47 +0.0
1,397,712 + GFF1290 0.49 -0.9
1,397,713 - GFF1290 0.49 -0.9
1,397,822 - GFF1290 0.77 +0.5
1,397,822 - GFF1290 0.77 +0.1
1,398,011 - GFF1291 0.12 -1.2
1,398,011 - GFF1291 0.12 -1.1
1,398,159 + GFF1291 0.30 -0.8
1,398,160 - GFF1291 0.31 -0.1
1,398,160 - GFF1291 0.31 +0.2
1,398,229 + GFF1291 0.39 -0.2
1,398,229 + GFF1291 0.39 -1.0
1,398,242 + GFF1291 0.41 +0.3
1,398,242 + GFF1291 0.41 -0.4
1,398,243 - GFF1291 0.41 +1.8
1,398,337 + GFF1291 0.53 -0.3
1,398,422 + GFF1291 0.63 +0.6
1,398,422 + GFF1291 0.63 -0.6
1,398,433 + GFF1291 0.65 -0.7
1,398,433 + GFF1291 0.65 +0.2
1,398,433 + GFF1291 0.65 -0.3
1,398,434 - GFF1291 0.65 +1.2
1,398,434 - GFF1291 0.65 +0.4
1,398,434 - GFF1291 0.65 +0.5
1,398,434 - GFF1291 0.65 -0.2
1,398,473 + GFF1291 0.70 -1.1
1,398,473 + GFF1291 0.70 +1.2
1,398,473 + GFF1291 0.70 -0.5
1,398,474 - GFF1291 0.70 -0.3

Or see this region's nucleotide sequence