Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06827

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06826 and MPMX19_06827 are separated by 2 nucleotidesMPMX19_06827 and MPMX19_06828 are separated by 31 nucleotides MPMX19_06826: MPMX19_06826 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 91,581 to 92,615 _06826 MPMX19_06827: MPMX19_06827 - Ectoine hydrolase, at 92,618 to 93,817 _06827 MPMX19_06828: MPMX19_06828 - Delta(1)-pyrroline-2-carboxylate reductase, at 93,849 to 94,853 _06828 Position (kb) 92 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.020 kb on + strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.021 kb on - strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.059 kb on + strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.060 kb on - strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.218 kb on + strand, within MPMX19_06826at 92.327 kb on - strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.416 kb on + strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.417 kb on - strand, within MPMX19_06826at 92.524 kb on + strandat 92.710 kb on + strandat 92.817 kb on + strand, within MPMX19_06827at 92.817 kb on + strand, within MPMX19_06827at 92.865 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.030 kb on + strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.031 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.040 kb on - strand, within MPMX19_06827at 93.157 kb on - strand, within MPMX19_06827at 93.216 kb on + strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.217 kb on - strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.315 kb on + strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.316 kb on - strand, within MPMX19_06827at 93.414 kb on + strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.415 kb on - strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.435 kb on + strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.436 kb on - strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.534 kb on + strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.535 kb on - strand, within MPMX19_06827at 93.573 kb on + strand, within MPMX19_06827at 93.616 kb on - strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.663 kb on + strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.664 kb on - strand, within MPMX19_06827at 93.682 kb on - strand, within MPMX19_06827at 93.780 kb on + strandat 93.781 kb on - strandat 93.834 kb on + strandat 93.834 kb on + strandat 93.834 kb on + strandat 93.835 kb on - strandat 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.102 kb on + strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.103 kb on - strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.660 kb on + strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.661 kb on - strand, within MPMX19_06828at 94.692 kb on - strand, within MPMX19_06828

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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92,020 + MPMX19_06826 0.42 -0.9
92,020 + MPMX19_06826 0.42 +0.7
92,020 + MPMX19_06826 0.42 -0.0
92,020 + MPMX19_06826 0.42 -0.2
92,020 + MPMX19_06826 0.42 +0.5
92,020 + MPMX19_06826 0.42 -1.4
92,020 + MPMX19_06826 0.42 -1.3
92,021 - MPMX19_06826 0.43 +0.4
92,021 - MPMX19_06826 0.43 -1.3
92,021 - MPMX19_06826 0.43 -1.1
92,021 - MPMX19_06826 0.43 -0.6
92,059 + MPMX19_06826 0.46 +0.3
92,059 + MPMX19_06826 0.46 +0.9
92,059 + MPMX19_06826 0.46 -1.1
92,059 + MPMX19_06826 0.46 -1.4
92,059 + MPMX19_06826 0.46 -0.1
92,060 - MPMX19_06826 0.46 +0.1
92,060 - MPMX19_06826 0.46 -2.2
92,060 - MPMX19_06826 0.46 -2.2
92,218 + MPMX19_06826 0.62 -0.0
92,218 + MPMX19_06826 0.62 -1.6
92,218 + MPMX19_06826 0.62 +0.6
92,218 + MPMX19_06826 0.62 +0.7
92,218 + MPMX19_06826 0.62 -0.6
92,218 + MPMX19_06826 0.62 -0.8
92,327 - MPMX19_06826 0.72 +0.4
92,416 + MPMX19_06826 0.81 +0.8
92,416 + MPMX19_06826 0.81 -2.7
92,416 + MPMX19_06826 0.81 +1.0
92,417 - MPMX19_06826 0.81 -0.2
92,417 - MPMX19_06826 0.81 -0.8
92,417 - MPMX19_06826 0.81 -1.5
92,417 - MPMX19_06826 0.81 -1.1
92,417 - MPMX19_06826 0.81 +1.2
92,524 + +1.4
92,710 + -0.2
92,817 + MPMX19_06827 0.17 +0.6
92,817 + MPMX19_06827 0.17 -1.1
92,865 + MPMX19_06827 0.21 +0.2
93,030 + MPMX19_06827 0.34 -0.4
93,030 + MPMX19_06827 0.34 +0.6
93,030 + MPMX19_06827 0.34 +0.5
93,031 - MPMX19_06827 0.34 -1.4
93,031 - MPMX19_06827 0.34 +0.4
93,040 - MPMX19_06827 0.35 -2.0
93,040 - MPMX19_06827 0.35 -1.4
93,040 - MPMX19_06827 0.35 +0.1
93,157 - MPMX19_06827 0.45 -0.6
93,216 + MPMX19_06827 0.50 -1.6
93,217 - MPMX19_06827 0.50 -0.5
93,217 - MPMX19_06827 0.50 +1.5
93,217 - MPMX19_06827 0.50 +1.2
93,217 - MPMX19_06827 0.50 -0.6
93,217 - MPMX19_06827 0.50 -0.4
93,315 + MPMX19_06827 0.58 +0.4
93,315 + MPMX19_06827 0.58 +0.4
93,315 + MPMX19_06827 0.58 +0.5
93,315 + MPMX19_06827 0.58 +0.0
93,315 + MPMX19_06827 0.58 +0.1
93,315 + MPMX19_06827 0.58 +0.5
93,316 - MPMX19_06827 0.58 -0.3
93,316 - MPMX19_06827 0.58 -1.0
93,316 - MPMX19_06827 0.58 +0.8
93,316 - MPMX19_06827 0.58 -0.9
93,316 - MPMX19_06827 0.58 -1.1
93,414 + MPMX19_06827 0.66 +1.6
93,415 - MPMX19_06827 0.66 +0.4
93,415 - MPMX19_06827 0.66 +1.4
93,435 + MPMX19_06827 0.68 -1.8
93,435 + MPMX19_06827 0.68 +0.4
93,435 + MPMX19_06827 0.68 -0.3
93,435 + MPMX19_06827 0.68 -1.1
93,436 - MPMX19_06827 0.68 +0.5
93,436 - MPMX19_06827 0.68 -1.7
93,436 - MPMX19_06827 0.68 +0.4
93,436 - MPMX19_06827 0.68 -1.2
93,534 + MPMX19_06827 0.76 +0.9
93,534 + MPMX19_06827 0.76 +0.9
93,534 + MPMX19_06827 0.76 +0.0
93,534 + MPMX19_06827 0.76 +0.9
93,534 + MPMX19_06827 0.76 +0.4
93,535 - MPMX19_06827 0.76 -0.1
93,535 - MPMX19_06827 0.76 +0.0
93,535 - MPMX19_06827 0.76 -0.7
93,535 - MPMX19_06827 0.76 +0.4
93,535 - MPMX19_06827 0.76 -0.6
93,573 + MPMX19_06827 0.80 -0.4
93,616 - MPMX19_06827 0.83 -0.8
93,663 + MPMX19_06827 0.87 +1.2
93,663 + MPMX19_06827 0.87 +0.1
93,663 + MPMX19_06827 0.87 -0.3
93,663 + MPMX19_06827 0.87 -0.2
93,664 - MPMX19_06827 0.87 -1.0
93,664 - MPMX19_06827 0.87 +0.4
93,664 - MPMX19_06827 0.87 +0.7
93,664 - MPMX19_06827 0.87 +1.8
93,682 - MPMX19_06827 0.89 -2.5
93,780 + +0.1
93,781 - +0.2
93,834 + +0.7
93,834 + +0.4
93,834 + -1.2
93,835 - -0.1
94,102 + MPMX19_06828 0.25 -0.6
94,102 + MPMX19_06828 0.25 -1.7
94,102 + MPMX19_06828 0.25 -1.0
94,102 + MPMX19_06828 0.25 -0.7
94,102 + MPMX19_06828 0.25 +1.4
94,102 + MPMX19_06828 0.25 -0.3
94,103 - MPMX19_06828 0.25 +0.2
94,103 - MPMX19_06828 0.25 -0.1
94,103 - MPMX19_06828 0.25 -0.5
94,103 - MPMX19_06828 0.25 -0.3
94,660 + MPMX19_06828 0.81 -1.3
94,660 + MPMX19_06828 0.81 -1.0
94,660 + MPMX19_06828 0.81 -0.8
94,660 + MPMX19_06828 0.81 -0.1
94,660 + MPMX19_06828 0.81 -0.1
94,660 + MPMX19_06828 0.81 +0.6
94,660 + MPMX19_06828 0.81 +0.8
94,660 + MPMX19_06828 0.81 -0.2
94,661 - MPMX19_06828 0.81 -1.4
94,661 - MPMX19_06828 0.81 -1.0
94,661 - MPMX19_06828 0.81 -0.6
94,661 - MPMX19_06828 0.81 +0.0
94,661 - MPMX19_06828 0.81 +0.7
94,661 - MPMX19_06828 0.81 -0.4
94,661 - MPMX19_06828 0.81 -0.1
94,661 - MPMX19_06828 0.81 -1.0
94,661 - MPMX19_06828 0.81 -2.0
94,661 - MPMX19_06828 0.81 -0.1
94,661 - MPMX19_06828 0.81 -1.2
94,661 - MPMX19_06828 0.81 -0.3
94,661 - MPMX19_06828 0.81 +1.1
94,661 - MPMX19_06828 0.81 -1.1
94,692 - MPMX19_06828 0.84 +1.6

Or see this region's nucleotide sequence