Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06088 and MPMX19_06089 overlap by 4 nucleotides MPMX19_06089 and MPMX19_06090 are separated by 174 nucleotides
MPMX19_06088: MPMX19_06088 - Sensor histidine kinase RcsC, at 263,417 to 267,214
_06088
MPMX19_06089: MPMX19_06089 - Regulatory protein LuxO, at 267,211 to 268,653
_06089
MPMX19_06090: MPMX19_06090 - Pyruvate dehydrogenase complex repressor, at 268,828 to 269,598
_06090
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.502 kb on + strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.503 kb on - strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.565 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.610 kb on + strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.611 kb on - strand, within MPMX19_06088 at 266.853 kb on + strand at 266.853 kb on + strand at 266.854 kb on - strand at 266.854 kb on - strand at 266.854 kb on - strand at 267.118 kb on + strand at 267.119 kb on - strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.132 kb on + strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.133 kb on - strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.272 kb on + strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.273 kb on - strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.298 kb on + strand at 267.299 kb on - strand at 267.576 kb on + strand, within MPMX19_06089 at 267.576 kb on + strand, within MPMX19_06089 at 267.576 kb on + strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.577 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.630 kb on - strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.719 kb on + strand, within MPMX19_06089 at 267.720 kb on - strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.722 kb on + strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 267.723 kb on - strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.163 kb on + strand, within MPMX19_06089 at 268.164 kb on - strand, within MPMX19_06089 at 268.232 kb on + strand, within MPMX19_06089 at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.568 kb on + strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.569 kb on - strand at 268.590 kb on + strand at 268.591 kb on - strand at 268.591 kb on - strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.726 kb on + strand at 268.727 kb on - strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.772 kb on + strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.773 kb on - strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 268.776 kb on - strand at 269.060 kb on + strand, within MPMX19_06090 at 269.135 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.287 kb on + strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.310 kb on - strand, within MPMX19_06090 at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand at 269.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 266,502 + MPMX19_06088 0.81 -0.2 266,502 + MPMX19_06088 0.81 -0.1 266,502 + MPMX19_06088 0.81 +0.9 266,502 + MPMX19_06088 0.81 -0.9 266,503 - MPMX19_06088 0.81 +1.2 266,503 - MPMX19_06088 0.81 -1.1 266,503 - MPMX19_06088 0.81 +0.1 266,565 + MPMX19_06088 0.83 +1.1 266,565 + MPMX19_06088 0.83 -1.6 266,565 + MPMX19_06088 0.83 -1.3 266,610 + MPMX19_06088 0.84 -1.3 266,610 + MPMX19_06088 0.84 +0.6 266,610 + MPMX19_06088 0.84 -0.2 266,610 + MPMX19_06088 0.84 -0.4 266,610 + MPMX19_06088 0.84 +0.3 266,610 + MPMX19_06088 0.84 +1.3 266,610 + MPMX19_06088 0.84 -0.5 266,610 + MPMX19_06088 0.84 +0.0 266,610 + MPMX19_06088 0.84 -0.1 266,610 + MPMX19_06088 0.84 -0.9 266,610 + MPMX19_06088 0.84 +1.0 266,610 + MPMX19_06088 0.84 -0.4 266,610 + MPMX19_06088 0.84 -0.3 266,610 + MPMX19_06088 0.84 -0.8 266,610 + MPMX19_06088 0.84 +0.7 266,610 + MPMX19_06088 0.84 +0.7 266,610 + MPMX19_06088 0.84 +0.3 266,611 - MPMX19_06088 0.84 +0.1 266,611 - MPMX19_06088 0.84 +0.2 266,611 - MPMX19_06088 0.84 -1.3 266,611 - MPMX19_06088 0.84 +0.7 266,611 - MPMX19_06088 0.84 -1.5 266,611 - MPMX19_06088 0.84 -0.1 266,611 - MPMX19_06088 0.84 -0.8 266,611 - MPMX19_06088 0.84 +1.1 266,611 - MPMX19_06088 0.84 +1.3 266,611 - MPMX19_06088 0.84 -0.0 266,611 - MPMX19_06088 0.84 -0.2 266,611 - MPMX19_06088 0.84 +0.3 266,611 - MPMX19_06088 0.84 -2.0 266,611 - MPMX19_06088 0.84 -0.8 266,611 - MPMX19_06088 0.84 +0.3 266,611 - MPMX19_06088 0.84 -1.1 266,853 + +0.2 266,853 + +0.5 266,854 - -0.5 266,854 - +1.3 266,854 - -0.9 267,118 + -0.0 267,119 - -1.3 267,132 + -0.9 267,132 + -0.3 267,132 + +1.2 267,132 + -0.5 267,132 + -0.5 267,132 + -2.8 267,132 + -0.5 267,132 + +0.7 267,132 + +0.9 267,133 - -1.3 267,133 - -0.5 267,133 - +0.1 267,133 - +1.0 267,133 - +0.2 267,133 - -0.5 267,133 - -0.4 267,133 - -0.1 267,133 - -0.3 267,250 - +1.2 267,250 - +0.7 267,272 + -2.2 267,272 + -0.2 267,272 + -1.5 267,272 + -0.3 267,272 + +0.0 267,272 + -1.3 267,272 + +1.9 267,272 + -1.1 267,273 - -1.4 267,273 - +1.1 267,273 - +1.7 267,273 - -2.0 267,273 - -0.1 267,298 + -1.5 267,298 + +0.5 267,298 + +1.1 267,298 + +1.2 267,299 - -1.7 267,576 + MPMX19_06089 0.25 -0.4 267,576 + MPMX19_06089 0.25 +1.1 267,576 + MPMX19_06089 0.25 +0.5 267,577 - MPMX19_06089 0.25 +1.5 267,577 - MPMX19_06089 0.25 +1.7 267,577 - MPMX19_06089 0.25 -1.3 267,630 - MPMX19_06089 0.29 -0.4 267,630 - MPMX19_06089 0.29 -0.9 267,630 - MPMX19_06089 0.29 +0.7 267,630 - MPMX19_06089 0.29 -0.1 267,719 + MPMX19_06089 0.35 +1.0 267,719 + MPMX19_06089 0.35 +0.1 267,719 + MPMX19_06089 0.35 -0.7 267,720 - MPMX19_06089 0.35 +0.3 267,722 + MPMX19_06089 0.35 -0.9 267,722 + MPMX19_06089 0.35 +0.5 267,722 + MPMX19_06089 0.35 +0.9 267,722 + MPMX19_06089 0.35 -2.1 267,722 + MPMX19_06089 0.35 -0.1 267,722 + MPMX19_06089 0.35 +0.6 267,722 + MPMX19_06089 0.35 +0.8 267,722 + MPMX19_06089 0.35 -1.1 267,722 + MPMX19_06089 0.35 -1.0 267,722 + MPMX19_06089 0.35 +1.0 267,722 + MPMX19_06089 0.35 +0.4 267,722 + MPMX19_06089 0.35 -1.1 267,722 + MPMX19_06089 0.35 +0.7 267,722 + MPMX19_06089 0.35 -0.1 267,722 + MPMX19_06089 0.35 +0.3 267,722 + MPMX19_06089 0.35 -0.1 267,723 - MPMX19_06089 0.35 -1.3 267,723 - MPMX19_06089 0.35 -2.1 267,723 - MPMX19_06089 0.35 +2.0 267,723 - MPMX19_06089 0.35 +0.9 267,723 - MPMX19_06089 0.35 +0.1 267,723 - MPMX19_06089 0.35 +0.0 267,723 - MPMX19_06089 0.35 -1.1 267,723 - MPMX19_06089 0.35 -1.3 267,723 - MPMX19_06089 0.35 -0.2 267,723 - MPMX19_06089 0.35 -0.5 267,723 - MPMX19_06089 0.35 +0.5 267,723 - MPMX19_06089 0.35 +1.0 267,723 - MPMX19_06089 0.35 +0.5 267,723 - MPMX19_06089 0.35 +0.1 267,723 - MPMX19_06089 0.35 +1.5 268,163 + MPMX19_06089 0.66 +1.0 268,163 + MPMX19_06089 0.66 -0.2 268,163 + MPMX19_06089 0.66 -1.9 268,163 + MPMX19_06089 0.66 -0.9 268,164 - MPMX19_06089 0.66 -0.3 268,232 + MPMX19_06089 0.71 -1.3 268,568 + +0.1 268,568 + +0.1 268,568 + -0.4 268,568 + -0.3 268,568 + -2.7 268,568 + +0.0 268,568 + -0.7 268,568 + -0.3 268,568 + -0.0 268,569 - +0.6 268,569 - -0.5 268,569 - -1.5 268,569 - +0.2 268,569 - -0.1 268,569 - -0.9 268,569 - +1.2 268,569 - +0.9 268,569 - -0.4 268,569 - -2.0 268,590 + -0.5 268,591 - +0.3 268,591 - -0.5 268,726 + -1.4 268,726 + +1.5 268,726 + -0.2 268,726 + +0.2 268,726 + -1.3 268,726 + -1.4 268,726 + -1.4 268,727 - +2.1 268,772 + -0.0 268,772 + -0.5 268,772 + -0.3 268,772 + +1.7 268,772 + -1.4 268,772 + -0.4 268,772 + -1.4 268,772 + -0.9 268,772 + -0.2 268,772 + -0.7 268,772 + -0.3 268,772 + -1.1 268,772 + -0.5 268,772 + +0.9 268,772 + -0.8 268,772 + +0.1 268,772 + -0.3 268,772 + -0.7 268,772 + +0.3 268,773 - +0.0 268,773 - +0.7 268,773 - -0.6 268,773 - +0.7 268,773 - +0.1 268,773 - +0.2 268,773 - +0.5 268,773 - +0.2 268,773 - +0.6 268,773 - +1.2 268,773 - -0.0 268,773 - +1.5 268,773 - -1.3 268,773 - +0.5 268,773 - +0.9 268,775 + +1.9 268,775 + +0.7 268,775 + -1.3 268,775 + -0.0 268,775 + +0.6 268,775 + +0.6 268,775 + -1.1 268,775 + +0.1 268,775 + -0.0 268,775 + +1.0 268,775 + -0.6 268,775 + -0.9 268,775 + -1.9 268,775 + -1.1 268,775 + -0.1 268,776 - -0.3 268,776 - -0.5 268,776 - -2.5 268,776 - +0.1 268,776 - -0.4 268,776 - -0.2 268,776 - +0.3 268,776 - +0.6 268,776 - -0.4 268,776 - -1.7 268,776 - +1.3 268,776 - -0.9 268,776 - -2.7 268,776 - +0.2 268,776 - +0.1 268,776 - -0.3 268,776 - +0.6 268,776 - -1.1 269,060 + MPMX19_06090 0.30 -0.5 269,135 + MPMX19_06090 0.40 -1.5 269,287 + MPMX19_06090 0.60 +0.1 269,287 + MPMX19_06090 0.60 -1.0 269,310 - MPMX19_06090 0.63 -0.9 269,310 - MPMX19_06090 0.63 -0.1 269,642 - -2.5 269,642 - -0.5 269,642 - +1.5 269,642 - -0.1 269,642 - -0.1 269,642 - +1.0
Or see this region's nucleotide sequence