Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05215

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05212 and MPMX19_05213 are separated by 16 nucleotidesMPMX19_05213 and MPMX19_05214 overlap by 11 nucleotidesMPMX19_05214 and MPMX19_05215 overlap by 26 nucleotidesMPMX19_05215 and MPMX19_05216 are separated by 38 nucleotides MPMX19_05212: MPMX19_05212 - Beta-barrel assembly-enhancing protease, at 737,709 to 740,018 _05212 MPMX19_05213: MPMX19_05213 - hypothetical protein, at 740,035 to 740,313 _05213 MPMX19_05214: MPMX19_05214 - ECF RNA polymerase sigma factor SigE, at 740,303 to 740,983 _05214 MPMX19_05215: MPMX19_05215 - hypothetical protein, at 740,958 to 741,437 _05215 MPMX19_05216: MPMX19_05216 - hypothetical protein, at 741,476 to 743,158 _05216 Position (kb) 740 741 742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 740.023 kb on + strandat 740.023 kb on + strandat 740.023 kb on + strandat 740.023 kb on + strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.024 kb on - strandat 740.025 kb on + strandat 740.025 kb on + strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.026 kb on - strandat 740.036 kb on + strandat 740.036 kb on + strandat 740.036 kb on + strandat 740.037 kb on - strandat 740.393 kb on + strand, within MPMX19_05214at 740.393 kb on + strand, within MPMX19_05214at 740.394 kb on - strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.402 kb on + strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.403 kb on - strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.441 kb on + strand, within MPMX19_05214at 740.455 kb on - strand, within MPMX19_05214at 740.455 kb on - strand, within MPMX19_05214at 740.646 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.778 kb on + strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.779 kb on - strand, within MPMX19_05214at 740.814 kb on + strand, within MPMX19_05214at 740.815 kb on - strand, within MPMX19_05214at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.181 kb on + strand, within MPMX19_05215at 741.182 kb on - strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.349 kb on + strand, within MPMX19_05215at 741.350 kb on - strand, within MPMX19_05215at 741.350 kb on - strand, within MPMX19_05215at 741.400 kb on + strandat 741.401 kb on - strandat 741.401 kb on - strandat 741.401 kb on - strandat 741.421 kb on + strandat 741.451 kb on + strandat 741.452 kb on - strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.501 kb on + strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.502 kb on - strandat 741.558 kb on + strandat 741.558 kb on + strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.559 kb on - strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.561 kb on + strandat 741.562 kb on - strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.582 kb on + strandat 741.583 kb on - strandat 741.583 kb on - strandat 741.678 kb on + strand, within MPMX19_05216at 741.678 kb on + strand, within MPMX19_05216at 741.678 kb on + strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.679 kb on - strand, within MPMX19_05216at 741.768 kb on + strand, within MPMX19_05216at 741.769 kb on - strand, within MPMX19_05216at 741.769 kb on - strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.789 kb on + strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.790 kb on - strand, within MPMX19_05216at 741.890 kb on + strand, within MPMX19_05216at 741.934 kb on - strand, within MPMX19_05216at 741.934 kb on - strand, within MPMX19_05216at 742.245 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.254 kb on + strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.255 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216at 742.345 kb on - strand, within MPMX19_05216

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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740,023 + -0.8
740,023 + -0.9
740,023 + +0.6
740,023 + +0.3
740,024 - +0.9
740,024 - -0.5
740,024 - -0.5
740,024 - +0.1
740,024 - +0.8
740,024 - -1.1
740,025 + -2.1
740,025 + +0.1
740,026 - -0.4
740,026 - +0.2
740,026 - -0.7
740,026 - -0.9
740,026 - -0.3
740,036 + -2.3
740,036 + -0.9
740,036 + -1.0
740,037 - +0.7
740,393 + MPMX19_05214 0.13 +0.1
740,393 + MPMX19_05214 0.13 -0.9
740,394 - MPMX19_05214 0.13 -0.4
740,402 + MPMX19_05214 0.15 +0.0
740,402 + MPMX19_05214 0.15 -2.1
740,402 + MPMX19_05214 0.15 +0.5
740,402 + MPMX19_05214 0.15 +0.3
740,402 + MPMX19_05214 0.15 +2.1
740,402 + MPMX19_05214 0.15 -1.5
740,402 + MPMX19_05214 0.15 -1.7
740,402 + MPMX19_05214 0.15 +0.4
740,402 + MPMX19_05214 0.15 +0.1
740,403 - MPMX19_05214 0.15 -0.6
740,403 - MPMX19_05214 0.15 -1.5
740,403 - MPMX19_05214 0.15 +1.1
740,403 - MPMX19_05214 0.15 +1.3
740,403 - MPMX19_05214 0.15 +1.0
740,403 - MPMX19_05214 0.15 +0.7
740,403 - MPMX19_05214 0.15 +0.0
740,403 - MPMX19_05214 0.15 -1.3
740,403 - MPMX19_05214 0.15 +0.5
740,403 - MPMX19_05214 0.15 -0.0
740,403 - MPMX19_05214 0.15 -0.3
740,403 - MPMX19_05214 0.15 -0.9
740,441 + MPMX19_05214 0.20 +0.2
740,441 + MPMX19_05214 0.20 -3.2
740,441 + MPMX19_05214 0.20 -1.0
740,455 - MPMX19_05214 0.22 -0.7
740,455 - MPMX19_05214 0.22 -0.4
740,646 + MPMX19_05214 0.50 -2.1
740,778 + MPMX19_05214 0.70 -1.8
740,778 + MPMX19_05214 0.70 -0.7
740,778 + MPMX19_05214 0.70 -2.1
740,778 + MPMX19_05214 0.70 -0.9
740,778 + MPMX19_05214 0.70 +1.8
740,778 + MPMX19_05214 0.70 +0.4
740,779 - MPMX19_05214 0.70 +0.2
740,779 - MPMX19_05214 0.70 -1.0
740,779 - MPMX19_05214 0.70 -2.2
740,779 - MPMX19_05214 0.70 -0.3
740,779 - MPMX19_05214 0.70 -0.5
740,779 - MPMX19_05214 0.70 +0.9
740,779 - MPMX19_05214 0.70 -0.7
740,779 - MPMX19_05214 0.70 -2.5
740,779 - MPMX19_05214 0.70 +0.3
740,814 + MPMX19_05214 0.75 -0.4
740,815 - MPMX19_05214 0.75 +0.2
741,181 + MPMX19_05215 0.46 -0.2
741,181 + MPMX19_05215 0.46 -1.0
741,181 + MPMX19_05215 0.46 +1.6
741,181 + MPMX19_05215 0.46 -1.0
741,181 + MPMX19_05215 0.46 -0.5
741,182 - MPMX19_05215 0.47 -0.9
741,349 + MPMX19_05215 0.81 -0.4
741,349 + MPMX19_05215 0.81 -0.4
741,349 + MPMX19_05215 0.81 +1.0
741,349 + MPMX19_05215 0.81 -2.0
741,349 + MPMX19_05215 0.81 -1.2
741,350 - MPMX19_05215 0.82 -0.7
741,350 - MPMX19_05215 0.82 -1.0
741,400 + -1.3
741,401 - -0.1
741,401 - -1.5
741,401 - -0.5
741,421 + -2.7
741,451 + +1.6
741,452 - -1.5
741,501 + +1.9
741,501 + +1.0
741,501 + +1.2
741,501 + -0.6
741,502 - -0.7
741,502 - -0.3
741,502 - +0.0
741,502 - -1.0
741,502 - +0.0
741,502 - -0.7
741,502 - -0.6
741,558 + +0.4
741,558 + -0.1
741,559 - -0.3
741,559 - -0.5
741,559 - -1.5
741,559 - -0.0
741,561 + -0.5
741,561 + -0.7
741,561 + -0.0
741,561 + +0.4
741,562 - +0.6
741,582 + -0.2
741,582 + -1.5
741,582 + +0.2
741,582 + +1.3
741,582 + -2.2
741,583 - +0.3
741,583 - +1.0
741,678 + MPMX19_05216 0.12 -1.0
741,678 + MPMX19_05216 0.12 +0.1
741,678 + MPMX19_05216 0.12 -1.4
741,679 - MPMX19_05216 0.12 -2.1
741,679 - MPMX19_05216 0.12 +0.5
741,679 - MPMX19_05216 0.12 -0.9
741,679 - MPMX19_05216 0.12 -0.8
741,679 - MPMX19_05216 0.12 +1.2
741,679 - MPMX19_05216 0.12 -0.7
741,768 + MPMX19_05216 0.17 -1.6
741,769 - MPMX19_05216 0.17 +0.3
741,769 - MPMX19_05216 0.17 -0.7
741,789 + MPMX19_05216 0.19 -0.4
741,789 + MPMX19_05216 0.19 +0.2
741,789 + MPMX19_05216 0.19 +0.3
741,789 + MPMX19_05216 0.19 -0.1
741,789 + MPMX19_05216 0.19 -2.5
741,789 + MPMX19_05216 0.19 -0.6
741,789 + MPMX19_05216 0.19 -0.5
741,789 + MPMX19_05216 0.19 -0.7
741,789 + MPMX19_05216 0.19 -0.7
741,789 + MPMX19_05216 0.19 -1.1
741,789 + MPMX19_05216 0.19 -1.8
741,790 - MPMX19_05216 0.19 +0.2
741,790 - MPMX19_05216 0.19 +0.1
741,790 - MPMX19_05216 0.19 -0.3
741,790 - MPMX19_05216 0.19 -0.6
741,890 + MPMX19_05216 0.25 -2.0
741,934 - MPMX19_05216 0.27 +0.0
741,934 - MPMX19_05216 0.27 +0.5
742,245 + MPMX19_05216 0.46 -0.1
742,254 + MPMX19_05216 0.46 -1.4
742,254 + MPMX19_05216 0.46 +1.7
742,254 + MPMX19_05216 0.46 +1.8
742,254 + MPMX19_05216 0.46 +0.0
742,254 + MPMX19_05216 0.46 +0.0
742,255 - MPMX19_05216 0.46 -1.1
742,255 - MPMX19_05216 0.46 +0.5
742,255 - MPMX19_05216 0.46 -2.0
742,345 - MPMX19_05216 0.52 -1.0
742,345 - MPMX19_05216 0.52 +0.7
742,345 - MPMX19_05216 0.52 +0.1
742,345 - MPMX19_05216 0.52 +0.1
742,345 - MPMX19_05216 0.52 -0.3
742,345 - MPMX19_05216 0.52 +0.2

Or see this region's nucleotide sequence