Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05173

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05172 and MPMX19_05173 are separated by 48 nucleotidesMPMX19_05173 and MPMX19_05174 are separated by 46 nucleotides MPMX19_05172: MPMX19_05172 - Vitamin B12 transporter BtuB, at 673,998 to 676,199 _05172 MPMX19_05173: MPMX19_05173 - hypothetical protein, at 676,248 to 677,225 _05173 MPMX19_05174: MPMX19_05174 - Putative acyl-CoA dehydrogenase YdbM, at 677,272 to 678,477 _05174 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 675.264 kb on + strand, within MPMX19_05172at 675.264 kb on + strand, within MPMX19_05172at 675.265 kb on - strand, within MPMX19_05172at 675.265 kb on - strand, within MPMX19_05172at 675.388 kb on + strand, within MPMX19_05172at 675.389 kb on - strand, within MPMX19_05172at 675.397 kb on - strand, within MPMX19_05172at 675.397 kb on - strand, within MPMX19_05172at 675.432 kb on + strand, within MPMX19_05172at 675.433 kb on - strand, within MPMX19_05172at 675.462 kb on + strand, within MPMX19_05172at 675.462 kb on + strand, within MPMX19_05172at 675.462 kb on + strand, within MPMX19_05172at 675.462 kb on + strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.463 kb on - strand, within MPMX19_05172at 675.472 kb on - strand, within MPMX19_05172at 675.472 kb on - strand, within MPMX19_05172at 675.534 kb on + strand, within MPMX19_05172at 675.534 kb on + strand, within MPMX19_05172at 675.534 kb on + strand, within MPMX19_05172at 675.535 kb on - strand, within MPMX19_05172at 675.535 kb on - strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.639 kb on + strand, within MPMX19_05172at 675.640 kb on - strand, within MPMX19_05172at 675.640 kb on - strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.642 kb on + strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.643 kb on - strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.648 kb on + strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.649 kb on - strand, within MPMX19_05172at 675.771 kb on + strand, within MPMX19_05172at 675.771 kb on + strand, within MPMX19_05172at 675.771 kb on + strand, within MPMX19_05172at 675.771 kb on + strand, within MPMX19_05172at 675.771 kb on + strand, within MPMX19_05172at 675.772 kb on - strand, within MPMX19_05172at 675.772 kb on - strand, within MPMX19_05172at 675.772 kb on - strand, within MPMX19_05172at 675.858 kb on + strand, within MPMX19_05172at 675.858 kb on + strand, within MPMX19_05172at 675.858 kb on + strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.859 kb on - strand, within MPMX19_05172at 675.993 kb on + strandat 675.993 kb on + strandat 675.993 kb on + strandat 675.993 kb on + strandat 675.993 kb on + strandat 675.993 kb on + strandat 675.993 kb on + strandat 675.994 kb on - strandat 675.994 kb on - strandat 675.994 kb on - strandat 675.994 kb on - strandat 675.994 kb on - strandat 675.994 kb on - strandat 675.994 kb on - strandat 676.020 kb on + strandat 676.077 kb on + strandat 676.077 kb on + strandat 676.077 kb on + strandat 676.077 kb on + strandat 676.078 kb on - strandat 676.078 kb on - strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.080 kb on + strandat 676.081 kb on - strandat 676.081 kb on - strandat 676.081 kb on - strandat 676.104 kb on + strandat 676.105 kb on - strandat 676.105 kb on - strandat 676.198 kb on - strandat 676.198 kb on - strandat 676.198 kb on - strandat 676.772 kb on + strand, within MPMX19_05173at 676.772 kb on + strand, within MPMX19_05173at 676.773 kb on - strand, within MPMX19_05173at 676.849 kb on + strand, within MPMX19_05173at 676.850 kb on - strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.950 kb on + strand, within MPMX19_05173at 676.951 kb on - strand, within MPMX19_05173at 676.951 kb on - strand, within MPMX19_05173at 676.990 kb on + strand, within MPMX19_05173at 676.993 kb on - strand, within MPMX19_05173at 677.069 kb on - strand, within MPMX19_05173at 677.069 kb on - strand, within MPMX19_05173at 677.212 kb on - strandat 677.453 kb on + strand, within MPMX19_05174at 677.453 kb on + strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.454 kb on - strand, within MPMX19_05174at 677.458 kb on + strand, within MPMX19_05174at 677.459 kb on - strand, within MPMX19_05174at 677.678 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.972 kb on + strand, within MPMX19_05174at 677.973 kb on - strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.176 kb on + strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174at 678.177 kb on - strand, within MPMX19_05174

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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675,264 + MPMX19_05172 0.57 +1.1
675,264 + MPMX19_05172 0.57 -0.1
675,265 - MPMX19_05172 0.58 -0.6
675,265 - MPMX19_05172 0.58 +0.2
675,388 + MPMX19_05172 0.63 -1.0
675,389 - MPMX19_05172 0.63 -1.3
675,397 - MPMX19_05172 0.64 +0.3
675,397 - MPMX19_05172 0.64 -0.4
675,432 + MPMX19_05172 0.65 +0.4
675,433 - MPMX19_05172 0.65 +0.3
675,462 + MPMX19_05172 0.66 -0.8
675,462 + MPMX19_05172 0.66 -1.1
675,462 + MPMX19_05172 0.66 +0.2
675,462 + MPMX19_05172 0.66 +0.4
675,463 - MPMX19_05172 0.67 +0.0
675,463 - MPMX19_05172 0.67 +1.1
675,463 - MPMX19_05172 0.67 -0.2
675,463 - MPMX19_05172 0.67 -1.1
675,463 - MPMX19_05172 0.67 +1.0
675,463 - MPMX19_05172 0.67 -0.1
675,463 - MPMX19_05172 0.67 -0.7
675,463 - MPMX19_05172 0.67 +0.0
675,472 - MPMX19_05172 0.67 -0.1
675,472 - MPMX19_05172 0.67 +0.3
675,534 + MPMX19_05172 0.70 +0.7
675,534 + MPMX19_05172 0.70 -0.3
675,534 + MPMX19_05172 0.70 +0.5
675,535 - MPMX19_05172 0.70 +0.3
675,535 - MPMX19_05172 0.70 +0.0
675,639 + MPMX19_05172 0.75 -1.5
675,639 + MPMX19_05172 0.75 -1.0
675,639 + MPMX19_05172 0.75 -2.0
675,639 + MPMX19_05172 0.75 +0.2
675,639 + MPMX19_05172 0.75 +0.3
675,639 + MPMX19_05172 0.75 -0.3
675,639 + MPMX19_05172 0.75 +0.7
675,639 + MPMX19_05172 0.75 +0.0
675,640 - MPMX19_05172 0.75 -0.7
675,640 - MPMX19_05172 0.75 -0.6
675,642 + MPMX19_05172 0.75 -0.3
675,642 + MPMX19_05172 0.75 +1.2
675,642 + MPMX19_05172 0.75 +2.0
675,642 + MPMX19_05172 0.75 +1.8
675,642 + MPMX19_05172 0.75 +1.3
675,642 + MPMX19_05172 0.75 +1.0
675,642 + MPMX19_05172 0.75 -0.2
675,642 + MPMX19_05172 0.75 -0.1
675,642 + MPMX19_05172 0.75 -0.8
675,642 + MPMX19_05172 0.75 -1.5
675,642 + MPMX19_05172 0.75 -0.7
675,642 + MPMX19_05172 0.75 -0.7
675,643 - MPMX19_05172 0.75 +0.1
675,643 - MPMX19_05172 0.75 +1.3
675,643 - MPMX19_05172 0.75 +0.3
675,643 - MPMX19_05172 0.75 -1.3
675,643 - MPMX19_05172 0.75 -0.5
675,643 - MPMX19_05172 0.75 +1.3
675,643 - MPMX19_05172 0.75 +1.3
675,643 - MPMX19_05172 0.75 -1.3
675,643 - MPMX19_05172 0.75 -0.3
675,648 + MPMX19_05172 0.75 +0.1
675,648 + MPMX19_05172 0.75 -0.3
675,648 + MPMX19_05172 0.75 -0.8
675,648 + MPMX19_05172 0.75 -0.3
675,648 + MPMX19_05172 0.75 -0.0
675,648 + MPMX19_05172 0.75 -0.9
675,648 + MPMX19_05172 0.75 +1.6
675,648 + MPMX19_05172 0.75 -0.4
675,648 + MPMX19_05172 0.75 -0.6
675,648 + MPMX19_05172 0.75 -0.2
675,648 + MPMX19_05172 0.75 -1.0
675,648 + MPMX19_05172 0.75 -0.0
675,648 + MPMX19_05172 0.75 -2.3
675,648 + MPMX19_05172 0.75 +0.0
675,648 + MPMX19_05172 0.75 +0.6
675,648 + MPMX19_05172 0.75 +0.2
675,648 + MPMX19_05172 0.75 -2.1
675,648 + MPMX19_05172 0.75 -0.5
675,648 + MPMX19_05172 0.75 +0.4
675,648 + MPMX19_05172 0.75 -0.5
675,648 + MPMX19_05172 0.75 +0.1
675,648 + MPMX19_05172 0.75 -1.5
675,648 + MPMX19_05172 0.75 -0.4
675,648 + MPMX19_05172 0.75 +0.9
675,648 + MPMX19_05172 0.75 -0.7
675,648 + MPMX19_05172 0.75 +0.6
675,649 - MPMX19_05172 0.75 -0.8
675,649 - MPMX19_05172 0.75 -0.5
675,649 - MPMX19_05172 0.75 +0.1
675,649 - MPMX19_05172 0.75 +0.1
675,649 - MPMX19_05172 0.75 -1.5
675,649 - MPMX19_05172 0.75 -0.3
675,649 - MPMX19_05172 0.75 -0.4
675,649 - MPMX19_05172 0.75 -1.0
675,649 - MPMX19_05172 0.75 -0.5
675,649 - MPMX19_05172 0.75 -0.2
675,649 - MPMX19_05172 0.75 -0.7
675,649 - MPMX19_05172 0.75 -0.2
675,649 - MPMX19_05172 0.75 +0.1
675,649 - MPMX19_05172 0.75 +0.3
675,649 - MPMX19_05172 0.75 -1.3
675,649 - MPMX19_05172 0.75 -1.1
675,649 - MPMX19_05172 0.75 +1.7
675,649 - MPMX19_05172 0.75 +0.5
675,649 - MPMX19_05172 0.75 +2.0
675,649 - MPMX19_05172 0.75 +0.7
675,771 + MPMX19_05172 0.81 -1.7
675,771 + MPMX19_05172 0.81 -0.3
675,771 + MPMX19_05172 0.81 -2.6
675,771 + MPMX19_05172 0.81 +1.3
675,771 + MPMX19_05172 0.81 +0.4
675,772 - MPMX19_05172 0.81 -0.3
675,772 - MPMX19_05172 0.81 -0.4
675,772 - MPMX19_05172 0.81 +0.2
675,858 + MPMX19_05172 0.84 -1.3
675,858 + MPMX19_05172 0.84 +0.2
675,858 + MPMX19_05172 0.84 -0.3
675,859 - MPMX19_05172 0.85 -0.8
675,859 - MPMX19_05172 0.85 +0.7
675,859 - MPMX19_05172 0.85 -0.5
675,859 - MPMX19_05172 0.85 +0.2
675,859 - MPMX19_05172 0.85 -0.0
675,859 - MPMX19_05172 0.85 -1.5
675,993 + +0.6
675,993 + -0.5
675,993 + +1.2
675,993 + -0.4
675,993 + +0.3
675,993 + -0.1
675,993 + +0.3
675,994 - -0.7
675,994 - -0.1
675,994 - -0.1
675,994 - -0.3
675,994 - +1.3
675,994 - -0.1
675,994 - -1.5
676,020 + -1.3
676,077 + -0.1
676,077 + +0.2
676,077 + +1.9
676,077 + +0.2
676,078 - -0.3
676,078 - +1.0
676,080 + -0.2
676,080 + -0.7
676,080 + -0.1
676,080 + +0.0
676,080 + +0.2
676,080 + -0.2
676,080 + -0.1
676,080 + -0.1
676,080 + -0.7
676,080 + +1.7
676,081 - +0.3
676,081 - -0.7
676,081 - -2.3
676,104 + -1.3
676,105 - +0.7
676,105 - +0.7
676,198 - +1.7
676,198 - -0.5
676,198 - +0.4
676,772 + MPMX19_05173 0.54 -1.1
676,772 + MPMX19_05173 0.54 -1.1
676,773 - MPMX19_05173 0.54 -1.1
676,849 + MPMX19_05173 0.61 -2.1
676,850 - MPMX19_05173 0.62 -1.1
676,950 + MPMX19_05173 0.72 +0.5
676,950 + MPMX19_05173 0.72 -0.9
676,950 + MPMX19_05173 0.72 -0.3
676,950 + MPMX19_05173 0.72 -0.3
676,951 - MPMX19_05173 0.72 -1.3
676,951 - MPMX19_05173 0.72 -0.3
676,990 + MPMX19_05173 0.76 -0.1
676,993 - MPMX19_05173 0.76 -0.1
677,069 - MPMX19_05173 0.84 -0.7
677,069 - MPMX19_05173 0.84 +0.7
677,212 - +0.8
677,453 + MPMX19_05174 0.15 -1.7
677,453 + MPMX19_05174 0.15 +1.0
677,454 - MPMX19_05174 0.15 -0.5
677,454 - MPMX19_05174 0.15 -0.1
677,454 - MPMX19_05174 0.15 +1.5
677,458 + MPMX19_05174 0.15 +1.3
677,459 - MPMX19_05174 0.16 -0.6
677,678 + MPMX19_05174 0.34 -0.4
677,972 + MPMX19_05174 0.58 -1.5
677,972 + MPMX19_05174 0.58 +0.7
677,973 - MPMX19_05174 0.58 +0.1
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 -0.1
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 -0.5
678,176 + MPMX19_05174 0.75 +0.3
678,176 + MPMX19_05174 0.75 -0.3
678,176 + MPMX19_05174 0.75 +0.9
678,176 + MPMX19_05174 0.75 +0.1
678,176 + MPMX19_05174 0.75 -0.3
678,176 + MPMX19_05174 0.75 +0.1
678,176 + MPMX19_05174 0.75 -0.3
678,176 + MPMX19_05174 0.75 +0.2
678,176 + MPMX19_05174 0.75 -0.8
678,176 + MPMX19_05174 0.75 -0.5
678,176 + MPMX19_05174 0.75 -0.6
678,176 + MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 -0.3
678,177 - MPMX19_05174 0.75 -1.3
678,177 - MPMX19_05174 0.75 -0.3
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 -1.2
678,177 - MPMX19_05174 0.75 -2.0
678,177 - MPMX19_05174 0.75 +0.5
678,177 - MPMX19_05174 0.75 +0.0
678,177 - MPMX19_05174 0.75 -0.2
678,177 - MPMX19_05174 0.75 +0.6
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 +1.0
678,177 - MPMX19_05174 0.75 -0.1
678,177 - MPMX19_05174 0.75 +0.6
678,177 - MPMX19_05174 0.75 +0.2
678,177 - MPMX19_05174 0.75 +0.0
678,177 - MPMX19_05174 0.75 -1.3
678,177 - MPMX19_05174 0.75 +1.1
678,177 - MPMX19_05174 0.75 +1.3
678,177 - MPMX19_05174 0.75 +0.2
678,177 - MPMX19_05174 0.75 +0.5
678,177 - MPMX19_05174 0.75 +0.3
678,177 - MPMX19_05174 0.75 +0.3
678,177 - MPMX19_05174 0.75 +1.1
678,177 - MPMX19_05174 0.75 -1.3

Or see this region's nucleotide sequence