Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04957

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04955 and MPMX19_04956 are separated by 42 nucleotidesMPMX19_04956 and MPMX19_04957 overlap by 4 nucleotidesMPMX19_04957 and MPMX19_04958 are separated by 45 nucleotides MPMX19_04955: MPMX19_04955 - hypothetical protein, at 418,209 to 418,970 _04955 MPMX19_04956: MPMX19_04956 - 5-oxoprolinase subunit B, at 419,013 to 419,780 _04956 MPMX19_04957: MPMX19_04957 - 5-oxoprolinase subunit C, at 419,777 to 420,799 _04957 MPMX19_04958: MPMX19_04958 - Methyl-accepting chemotaxis protein, at 420,845 to 422,419 _04958 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 418.779 kb on + strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.780 kb on - strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.851 kb on + strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.852 kb on - strand, within MPMX19_04955at 418.959 kb on + strandat 418.959 kb on + strandat 418.960 kb on - strandat 418.960 kb on - strandat 418.960 kb on - strandat 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.184 kb on + strand, within MPMX19_04956at 419.185 kb on - strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.251 kb on + strand, within MPMX19_04956at 419.252 kb on - strand, within MPMX19_04956at 419.413 kb on - strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.421 kb on + strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.422 kb on - strand, within MPMX19_04956at 419.451 kb on + strand, within MPMX19_04956at 419.451 kb on + strand, within MPMX19_04956at 419.452 kb on - strand, within MPMX19_04956at 419.452 kb on - strand, within MPMX19_04956at 419.691 kb on + strand, within MPMX19_04956at 419.709 kb on - strandat 419.709 kb on - strandat 419.719 kb on - strandat 419.740 kb on + strandat 419.740 kb on + strandat 419.741 kb on - strandat 419.855 kb on + strandat 420.119 kb on + strand, within MPMX19_04957at 420.120 kb on - strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.180 kb on + strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.181 kb on - strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.190 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.344 kb on + strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.345 kb on - strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.386 kb on + strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.387 kb on - strand, within MPMX19_04957at 420.591 kb on + strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.592 kb on - strand, within MPMX19_04957at 420.737 kb on + strandat 420.865 kb on + strandat 420.866 kb on - strandat 420.866 kb on - strandat 420.930 kb on + strandat 421.094 kb on + strand, within MPMX19_04958at 421.094 kb on + strand, within MPMX19_04958at 421.094 kb on + strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958at 421.095 kb on - strand, within MPMX19_04958

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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418,779 + MPMX19_04955 0.75 -0.5
418,780 - MPMX19_04955 0.75 -1.1
418,780 - MPMX19_04955 0.75 +0.8
418,780 - MPMX19_04955 0.75 -0.2
418,851 + MPMX19_04955 0.84 -0.9
418,851 + MPMX19_04955 0.84 -0.6
418,851 + MPMX19_04955 0.84 -0.8
418,851 + MPMX19_04955 0.84 -2.3
418,851 + MPMX19_04955 0.84 +0.0
418,852 - MPMX19_04955 0.84 -1.5
418,852 - MPMX19_04955 0.84 -0.2
418,852 - MPMX19_04955 0.84 +0.2
418,852 - MPMX19_04955 0.84 -0.3
418,852 - MPMX19_04955 0.84 +0.1
418,959 + -0.0
418,959 + +0.4
418,960 - -0.2
418,960 - -1.5
418,960 - -0.9
419,184 + MPMX19_04956 0.22 -2.9
419,184 + MPMX19_04956 0.22 +0.2
419,184 + MPMX19_04956 0.22 +0.2
419,184 + MPMX19_04956 0.22 -0.9
419,184 + MPMX19_04956 0.22 -2.1
419,184 + MPMX19_04956 0.22 +0.1
419,185 - MPMX19_04956 0.22 -1.8
419,251 + MPMX19_04956 0.31 -0.6
419,251 + MPMX19_04956 0.31 +0.6
419,251 + MPMX19_04956 0.31 -0.2
419,252 - MPMX19_04956 0.31 -0.3
419,413 - MPMX19_04956 0.52 -1.6
419,421 + MPMX19_04956 0.53 -1.6
419,421 + MPMX19_04956 0.53 +0.5
419,421 + MPMX19_04956 0.53 -0.8
419,421 + MPMX19_04956 0.53 -1.9
419,421 + MPMX19_04956 0.53 +2.1
419,421 + MPMX19_04956 0.53 -0.3
419,421 + MPMX19_04956 0.53 +1.6
419,421 + MPMX19_04956 0.53 -1.2
419,422 - MPMX19_04956 0.53 -0.8
419,422 - MPMX19_04956 0.53 -0.8
419,422 - MPMX19_04956 0.53 +0.1
419,422 - MPMX19_04956 0.53 +0.3
419,422 - MPMX19_04956 0.53 -3.0
419,422 - MPMX19_04956 0.53 -0.3
419,422 - MPMX19_04956 0.53 -2.2
419,451 + MPMX19_04956 0.57 -1.6
419,451 + MPMX19_04956 0.57 -0.3
419,452 - MPMX19_04956 0.57 -0.6
419,452 - MPMX19_04956 0.57 -1.3
419,691 + MPMX19_04956 0.88 +3.4
419,709 - -1.0
419,709 - -0.9
419,719 - +0.1
419,740 + -1.4
419,740 + -0.6
419,741 - -1.1
419,855 + -0.1
420,119 + MPMX19_04957 0.33 -0.1
420,120 - MPMX19_04957 0.34 +0.2
420,180 + MPMX19_04957 0.39 +0.5
420,180 + MPMX19_04957 0.39 +0.6
420,180 + MPMX19_04957 0.39 -1.4
420,180 + MPMX19_04957 0.39 -0.1
420,180 + MPMX19_04957 0.39 -0.8
420,180 + MPMX19_04957 0.39 -0.4
420,180 + MPMX19_04957 0.39 +0.2
420,180 + MPMX19_04957 0.39 -2.3
420,181 - MPMX19_04957 0.39 -1.6
420,181 - MPMX19_04957 0.39 +0.5
420,181 - MPMX19_04957 0.39 -0.7
420,181 - MPMX19_04957 0.39 -0.6
420,181 - MPMX19_04957 0.39 -1.6
420,181 - MPMX19_04957 0.39 -1.2
420,181 - MPMX19_04957 0.39 -0.2
420,181 - MPMX19_04957 0.39 -0.5
420,181 - MPMX19_04957 0.39 -0.4
420,190 + MPMX19_04957 0.40 -0.7
420,190 + MPMX19_04957 0.40 -0.9
420,344 + MPMX19_04957 0.55 +0.4
420,344 + MPMX19_04957 0.55 +0.6
420,344 + MPMX19_04957 0.55 -0.5
420,344 + MPMX19_04957 0.55 -0.9
420,344 + MPMX19_04957 0.55 +0.2
420,345 - MPMX19_04957 0.56 -0.4
420,345 - MPMX19_04957 0.56 +0.4
420,345 - MPMX19_04957 0.56 +0.2
420,345 - MPMX19_04957 0.56 +0.2
420,345 - MPMX19_04957 0.56 +0.1
420,345 - MPMX19_04957 0.56 +0.1
420,386 + MPMX19_04957 0.60 +0.1
420,386 + MPMX19_04957 0.60 +0.0
420,386 + MPMX19_04957 0.60 -1.4
420,386 + MPMX19_04957 0.60 -2.3
420,386 + MPMX19_04957 0.60 -0.6
420,387 - MPMX19_04957 0.60 -1.4
420,387 - MPMX19_04957 0.60 +0.4
420,387 - MPMX19_04957 0.60 -0.7
420,387 - MPMX19_04957 0.60 +0.0
420,387 - MPMX19_04957 0.60 -0.9
420,387 - MPMX19_04957 0.60 -1.4
420,387 - MPMX19_04957 0.60 -0.9
420,387 - MPMX19_04957 0.60 -1.9
420,387 - MPMX19_04957 0.60 +0.9
420,591 + MPMX19_04957 0.80 -0.1
420,592 - MPMX19_04957 0.80 -1.5
420,592 - MPMX19_04957 0.80 -0.6
420,737 + -0.9
420,865 + -0.0
420,866 - -0.6
420,866 - -0.5
420,930 + +0.8
421,094 + MPMX19_04958 0.16 -1.3
421,094 + MPMX19_04958 0.16 -0.6
421,094 + MPMX19_04958 0.16 -1.0
421,095 - MPMX19_04958 0.16 -0.2
421,095 - MPMX19_04958 0.16 +0.7
421,095 - MPMX19_04958 0.16 -2.1

Or see this region's nucleotide sequence