Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04769

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04767 and MPMX19_04768 are separated by 25 nucleotidesMPMX19_04768 and MPMX19_04769 overlap by 4 nucleotidesMPMX19_04769 and MPMX19_04770 are separated by 111 nucleotides MPMX19_04767: MPMX19_04767 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 158,156 to 158,905 _04767 MPMX19_04768: MPMX19_04768 - Apulose-4-phosphate transketolase subunit A, at 158,931 to 159,788 _04768 MPMX19_04769: MPMX19_04769 - Apulose-4-phosphate transketolase subunit B, at 159,785 to 160,801 _04769 MPMX19_04770: MPMX19_04770 - Sialic acid-binding periplasmic protein SiaP, at 160,913 to 161,953 _04770 Position (kb) 159 160 161Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 158.855 kb on + strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 158.856 kb on - strandat 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.042 kb on + strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.043 kb on - strand, within MPMX19_04768at 159.044 kb on + strand, within MPMX19_04768at 159.044 kb on + strand, within MPMX19_04768at 159.045 kb on - strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.087 kb on + strand, within MPMX19_04768at 159.088 kb on - strand, within MPMX19_04768at 159.088 kb on - strand, within MPMX19_04768at 159.105 kb on + strand, within MPMX19_04768at 159.106 kb on - strand, within MPMX19_04768at 159.166 kb on - strand, within MPMX19_04768at 159.181 kb on - strand, within MPMX19_04768at 159.181 kb on - strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.231 kb on + strand, within MPMX19_04768at 159.232 kb on - strand, within MPMX19_04768at 159.232 kb on - strand, within MPMX19_04768at 159.276 kb on + strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.277 kb on - strand, within MPMX19_04768at 159.381 kb on + strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.382 kb on - strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.450 kb on + strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.451 kb on - strand, within MPMX19_04768at 159.904 kb on + strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.905 kb on - strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.968 kb on + strand, within MPMX19_04769at 159.969 kb on - strand, within MPMX19_04769at 159.969 kb on - strand, within MPMX19_04769at 159.969 kb on - strand, within MPMX19_04769at 159.969 kb on - strand, within MPMX19_04769at 159.969 kb on - strand, within MPMX19_04769at 160.013 kb on + strand, within MPMX19_04769at 160.013 kb on + strand, within MPMX19_04769at 160.013 kb on + strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.014 kb on - strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.097 kb on + strand, within MPMX19_04769at 160.125 kb on - strand, within MPMX19_04769at 160.125 kb on - strand, within MPMX19_04769at 160.125 kb on - strand, within MPMX19_04769at 160.125 kb on - strand, within MPMX19_04769at 160.340 kb on + strand, within MPMX19_04769at 160.340 kb on + strand, within MPMX19_04769at 160.340 kb on + strand, within MPMX19_04769at 160.340 kb on + strand, within MPMX19_04769at 160.340 kb on + strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.341 kb on - strand, within MPMX19_04769at 160.342 kb on + strand, within MPMX19_04769at 160.342 kb on + strand, within MPMX19_04769at 160.343 kb on - strand, within MPMX19_04769at 160.343 kb on - strand, within MPMX19_04769at 160.343 kb on - strand, within MPMX19_04769at 160.385 kb on + strand, within MPMX19_04769at 160.386 kb on - strand, within MPMX19_04769at 160.386 kb on - strand, within MPMX19_04769at 160.391 kb on + strand, within MPMX19_04769at 160.392 kb on - strand, within MPMX19_04769at 160.392 kb on - strand, within MPMX19_04769at 160.751 kb on + strandat 160.751 kb on + strandat 160.752 kb on - strandat 160.752 kb on - strandat 160.752 kb on - strandat 160.800 kb on - strandat 160.800 kb on - strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.892 kb on + strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 160.893 kb on - strandat 161.012 kb on + strandat 161.013 kb on - strandat 161.045 kb on + strand, within MPMX19_04770at 161.045 kb on + strand, within MPMX19_04770at 161.045 kb on + strand, within MPMX19_04770at 161.045 kb on + strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.046 kb on - strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.294 kb on + strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.295 kb on - strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.546 kb on + strand, within MPMX19_04770at 161.547 kb on - strand, within MPMX19_04770at 161.618 kb on + strand, within MPMX19_04770at 161.618 kb on + strand, within MPMX19_04770at 161.666 kb on + strand, within MPMX19_04770at 161.667 kb on - strand, within MPMX19_04770

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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158,855 + -0.2
158,856 - -0.0
158,856 - +2.3
158,856 - -0.2
158,856 - -0.1
158,856 - -0.0
158,856 - +0.7
158,856 - +0.4
159,042 + MPMX19_04768 0.13 -1.0
159,042 + MPMX19_04768 0.13 +0.6
159,042 + MPMX19_04768 0.13 -1.8
159,042 + MPMX19_04768 0.13 -0.5
159,043 - MPMX19_04768 0.13 -1.7
159,043 - MPMX19_04768 0.13 -1.6
159,043 - MPMX19_04768 0.13 +0.9
159,043 - MPMX19_04768 0.13 -1.8
159,043 - MPMX19_04768 0.13 -0.7
159,044 + MPMX19_04768 0.13 +0.6
159,044 + MPMX19_04768 0.13 -3.1
159,045 - MPMX19_04768 0.13 -1.2
159,087 + MPMX19_04768 0.18 +1.0
159,087 + MPMX19_04768 0.18 +0.1
159,087 + MPMX19_04768 0.18 -0.7
159,088 - MPMX19_04768 0.18 +0.5
159,088 - MPMX19_04768 0.18 -0.1
159,105 + MPMX19_04768 0.20 -1.7
159,106 - MPMX19_04768 0.20 -0.7
159,166 - MPMX19_04768 0.27 -2.0
159,181 - MPMX19_04768 0.29 +0.3
159,181 - MPMX19_04768 0.29 -1.1
159,231 + MPMX19_04768 0.35 +0.9
159,231 + MPMX19_04768 0.35 -0.2
159,231 + MPMX19_04768 0.35 +1.2
159,232 - MPMX19_04768 0.35 +0.9
159,232 - MPMX19_04768 0.35 +1.3
159,276 + MPMX19_04768 0.40 -0.5
159,277 - MPMX19_04768 0.40 +0.0
159,277 - MPMX19_04768 0.40 -2.7
159,277 - MPMX19_04768 0.40 -0.7
159,381 + MPMX19_04768 0.52 -0.2
159,382 - MPMX19_04768 0.53 +0.3
159,382 - MPMX19_04768 0.53 -0.9
159,382 - MPMX19_04768 0.53 -0.0
159,382 - MPMX19_04768 0.53 +0.6
159,382 - MPMX19_04768 0.53 -0.8
159,382 - MPMX19_04768 0.53 +0.2
159,382 - MPMX19_04768 0.53 -0.2
159,382 - MPMX19_04768 0.53 +0.7
159,450 + MPMX19_04768 0.60 -2.2
159,450 + MPMX19_04768 0.60 -0.5
159,450 + MPMX19_04768 0.60 +0.7
159,450 + MPMX19_04768 0.60 +0.8
159,451 - MPMX19_04768 0.61 -1.1
159,451 - MPMX19_04768 0.61 +0.6
159,451 - MPMX19_04768 0.61 +1.6
159,904 + MPMX19_04769 0.12 +0.5
159,905 - MPMX19_04769 0.12 +1.3
159,905 - MPMX19_04769 0.12 +0.4
159,905 - MPMX19_04769 0.12 -2.0
159,905 - MPMX19_04769 0.12 -1.3
159,905 - MPMX19_04769 0.12 +1.2
159,968 + MPMX19_04769 0.18 +1.8
159,968 + MPMX19_04769 0.18 +0.4
159,968 + MPMX19_04769 0.18 -1.2
159,968 + MPMX19_04769 0.18 -0.7
159,968 + MPMX19_04769 0.18 -0.2
159,968 + MPMX19_04769 0.18 -0.1
159,968 + MPMX19_04769 0.18 -0.2
159,969 - MPMX19_04769 0.18 -0.7
159,969 - MPMX19_04769 0.18 +1.2
159,969 - MPMX19_04769 0.18 -0.7
159,969 - MPMX19_04769 0.18 -0.6
159,969 - MPMX19_04769 0.18 +0.6
160,013 + MPMX19_04769 0.22 +0.5
160,013 + MPMX19_04769 0.22 -0.6
160,013 + MPMX19_04769 0.22 +1.1
160,014 - MPMX19_04769 0.23 +0.0
160,014 - MPMX19_04769 0.23 -0.2
160,014 - MPMX19_04769 0.23 -0.1
160,014 - MPMX19_04769 0.23 -1.2
160,014 - MPMX19_04769 0.23 -0.5
160,014 - MPMX19_04769 0.23 -0.2
160,097 + MPMX19_04769 0.31 -0.0
160,097 + MPMX19_04769 0.31 +1.8
160,097 + MPMX19_04769 0.31 -0.7
160,097 + MPMX19_04769 0.31 +0.2
160,097 + MPMX19_04769 0.31 -1.5
160,097 + MPMX19_04769 0.31 -0.5
160,097 + MPMX19_04769 0.31 -0.7
160,125 - MPMX19_04769 0.33 -1.4
160,125 - MPMX19_04769 0.33 -1.5
160,125 - MPMX19_04769 0.33 -0.1
160,125 - MPMX19_04769 0.33 -0.2
160,340 + MPMX19_04769 0.55 -0.0
160,340 + MPMX19_04769 0.55 -0.8
160,340 + MPMX19_04769 0.55 +0.7
160,340 + MPMX19_04769 0.55 +0.8
160,340 + MPMX19_04769 0.55 -1.2
160,341 - MPMX19_04769 0.55 -0.8
160,341 - MPMX19_04769 0.55 -0.5
160,341 - MPMX19_04769 0.55 +0.7
160,341 - MPMX19_04769 0.55 +0.1
160,341 - MPMX19_04769 0.55 -0.5
160,341 - MPMX19_04769 0.55 -0.2
160,341 - MPMX19_04769 0.55 -2.0
160,342 + MPMX19_04769 0.55 -0.1
160,342 + MPMX19_04769 0.55 -1.4
160,343 - MPMX19_04769 0.55 -0.2
160,343 - MPMX19_04769 0.55 +0.6
160,343 - MPMX19_04769 0.55 +0.9
160,385 + MPMX19_04769 0.59 -0.5
160,386 - MPMX19_04769 0.59 -0.5
160,386 - MPMX19_04769 0.59 +1.4
160,391 + MPMX19_04769 0.60 +0.3
160,392 - MPMX19_04769 0.60 +1.3
160,392 - MPMX19_04769 0.60 -0.5
160,751 + +0.0
160,751 + -0.7
160,752 - +1.1
160,752 - +0.3
160,752 - -0.8
160,800 - +1.9
160,800 - +0.2
160,892 + -0.3
160,892 + +0.7
160,892 + +1.1
160,892 + -0.8
160,892 + -2.1
160,892 + -0.7
160,892 + +0.0
160,892 + +0.6
160,892 + -1.0
160,892 + -1.3
160,892 + +0.3
160,892 + +0.6
160,892 + -1.7
160,892 + -1.6
160,893 - -0.1
160,893 - +0.3
160,893 - +0.4
160,893 - -2.0
160,893 - +0.1
160,893 - -0.0
160,893 - +1.0
160,893 - -0.4
160,893 - -1.0
160,893 - -1.4
160,893 - -1.3
160,893 - +0.9
160,893 - +1.0
160,893 - -1.7
160,893 - +1.5
161,012 + -1.5
161,013 - +1.3
161,045 + MPMX19_04770 0.13 +0.3
161,045 + MPMX19_04770 0.13 +0.3
161,045 + MPMX19_04770 0.13 -0.9
161,045 + MPMX19_04770 0.13 -1.3
161,046 - MPMX19_04770 0.13 -0.7
161,046 - MPMX19_04770 0.13 -1.0
161,046 - MPMX19_04770 0.13 -0.3
161,046 - MPMX19_04770 0.13 -0.2
161,046 - MPMX19_04770 0.13 -2.0
161,046 - MPMX19_04770 0.13 +0.3
161,294 + MPMX19_04770 0.37 +0.1
161,294 + MPMX19_04770 0.37 -1.3
161,294 + MPMX19_04770 0.37 -0.8
161,294 + MPMX19_04770 0.37 -1.0
161,294 + MPMX19_04770 0.37 +1.9
161,295 - MPMX19_04770 0.37 -0.3
161,295 - MPMX19_04770 0.37 -0.3
161,295 - MPMX19_04770 0.37 -1.5
161,295 - MPMX19_04770 0.37 +0.8
161,295 - MPMX19_04770 0.37 -0.6
161,546 + MPMX19_04770 0.61 -2.1
161,546 + MPMX19_04770 0.61 -0.3
161,546 + MPMX19_04770 0.61 -0.5
161,546 + MPMX19_04770 0.61 -0.8
161,547 - MPMX19_04770 0.61 -1.0
161,618 + MPMX19_04770 0.68 +0.2
161,618 + MPMX19_04770 0.68 -1.4
161,666 + MPMX19_04770 0.72 -0.0
161,667 - MPMX19_04770 0.72 -0.0

Or see this region's nucleotide sequence