Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04742

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04741 and MPMX19_04742 overlap by 8 nucleotidesMPMX19_04742 and MPMX19_04743 overlap by 10 nucleotidesMPMX19_04743 and MPMX19_04744 overlap by 4 nucleotides MPMX19_04741: MPMX19_04741 - Formyltransferase/hydrolase complex Fhc subunit B, at 132,157 to 133,353 _04741 MPMX19_04742: MPMX19_04742 - Formyltransferase/hydrolase complex Fhc subunit A, at 133,346 to 135,034 _04742 MPMX19_04743: MPMX19_04743 - Formyltransferase/hydrolase complex subunit D, at 135,025 to 135,930 _04743 MPMX19_04744: MPMX19_04744 - Formyltransferase/hydrolase complex Fhc subunit C, at 135,927 to 136,736 _04744 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.931 kb on + strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.932 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 132.950 kb on - strand, within MPMX19_04741at 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.358 kb on + strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.359 kb on - strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.430 kb on + strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.431 kb on - strandat 133.679 kb on + strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.680 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.695 kb on - strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.787 kb on + strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.788 kb on - strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.862 kb on + strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 133.863 kb on - strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.168 kb on + strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.169 kb on - strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.483 kb on + strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.484 kb on - strand, within MPMX19_04742at 134.525 kb on + strand, within MPMX19_04742at 134.525 kb on + strand, within MPMX19_04742at 134.525 kb on + strand, within MPMX19_04742at 134.525 kb on + strand, within MPMX19_04742at 134.526 kb on - strand, within MPMX19_04742at 134.526 kb on - strand, within MPMX19_04742at 134.526 kb on - strand, within MPMX19_04742at 134.636 kb on + strand, within MPMX19_04742at 134.637 kb on - strand, within MPMX19_04742at 134.694 kb on + strand, within MPMX19_04742at 134.744 kb on + strand, within MPMX19_04742at 134.744 kb on + strand, within MPMX19_04742at 134.744 kb on + strand, within MPMX19_04742at 134.744 kb on + strand, within MPMX19_04742at 134.744 kb on + strand, within MPMX19_04742at 134.745 kb on - strand, within MPMX19_04742at 134.745 kb on - strand, within MPMX19_04742at 134.745 kb on - strand, within MPMX19_04742at 134.745 kb on - strand, within MPMX19_04742at 135.046 kb on - strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.058 kb on + strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.059 kb on - strandat 135.445 kb on + strand, within MPMX19_04743at 135.445 kb on + strand, within MPMX19_04743at 135.445 kb on + strand, within MPMX19_04743at 135.446 kb on - strand, within MPMX19_04743at 135.446 kb on - strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.664 kb on + strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.665 kb on - strand, within MPMX19_04743at 135.697 kb on + strand, within MPMX19_04743at 135.698 kb on - strand, within MPMX19_04743at 135.877 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
132,931 + MPMX19_04741 0.65 +2.5
132,931 + MPMX19_04741 0.65 -0.2
132,931 + MPMX19_04741 0.65 -1.5
132,931 + MPMX19_04741 0.65 -0.4
132,931 + MPMX19_04741 0.65 +1.3
132,931 + MPMX19_04741 0.65 -2.0
132,931 + MPMX19_04741 0.65 +0.5
132,931 + MPMX19_04741 0.65 -1.2
132,931 + MPMX19_04741 0.65 -0.4
132,931 + MPMX19_04741 0.65 -1.5
132,931 + MPMX19_04741 0.65 +0.7
132,932 - MPMX19_04741 0.65 +0.7
132,932 - MPMX19_04741 0.65 +0.1
132,932 - MPMX19_04741 0.65 +0.2
132,932 - MPMX19_04741 0.65 -2.5
132,932 - MPMX19_04741 0.65 -0.1
132,932 - MPMX19_04741 0.65 -1.5
132,932 - MPMX19_04741 0.65 -0.7
132,932 - MPMX19_04741 0.65 -1.1
132,932 - MPMX19_04741 0.65 +0.6
132,932 - MPMX19_04741 0.65 +0.7
132,950 - MPMX19_04741 0.66 +1.5
132,950 - MPMX19_04741 0.66 +0.1
132,950 - MPMX19_04741 0.66 -0.3
133,358 + +1.3
133,358 + -0.8
133,358 + -0.7
133,358 + +0.3
133,358 + -0.3
133,358 + -0.0
133,358 + +0.3
133,358 + -0.7
133,358 + +0.2
133,359 - -0.7
133,359 - +0.1
133,359 - +0.6
133,359 - +0.1
133,359 - -0.1
133,359 - -0.7
133,359 - -0.1
133,359 - +1.0
133,359 - -0.0
133,430 + -0.2
133,430 + +0.7
133,430 + -2.6
133,430 + -0.6
133,431 - +0.1
133,431 - -0.3
133,431 - +0.4
133,679 + MPMX19_04742 0.20 +1.1
133,680 - MPMX19_04742 0.20 -1.8
133,680 - MPMX19_04742 0.20 -1.0
133,695 - MPMX19_04742 0.21 +1.6
133,695 - MPMX19_04742 0.21 -1.7
133,695 - MPMX19_04742 0.21 -1.4
133,787 + MPMX19_04742 0.26 +0.0
133,787 + MPMX19_04742 0.26 -1.5
133,787 + MPMX19_04742 0.26 +0.1
133,787 + MPMX19_04742 0.26 -0.3
133,787 + MPMX19_04742 0.26 +0.7
133,788 - MPMX19_04742 0.26 +0.1
133,788 - MPMX19_04742 0.26 -2.1
133,788 - MPMX19_04742 0.26 -0.1
133,788 - MPMX19_04742 0.26 -1.1
133,862 + MPMX19_04742 0.31 -0.3
133,862 + MPMX19_04742 0.31 -0.7
133,863 - MPMX19_04742 0.31 -2.3
133,863 - MPMX19_04742 0.31 +0.0
133,863 - MPMX19_04742 0.31 -0.8
133,863 - MPMX19_04742 0.31 -0.7
133,863 - MPMX19_04742 0.31 -0.4
133,863 - MPMX19_04742 0.31 +0.6
133,863 - MPMX19_04742 0.31 -0.3
133,863 - MPMX19_04742 0.31 +1.0
134,168 + MPMX19_04742 0.49 +1.7
134,168 + MPMX19_04742 0.49 +0.0
134,168 + MPMX19_04742 0.49 -0.1
134,168 + MPMX19_04742 0.49 -0.1
134,168 + MPMX19_04742 0.49 -1.5
134,168 + MPMX19_04742 0.49 -1.6
134,168 + MPMX19_04742 0.49 +0.3
134,169 - MPMX19_04742 0.49 +1.3
134,169 - MPMX19_04742 0.49 +0.0
134,169 - MPMX19_04742 0.49 -1.3
134,169 - MPMX19_04742 0.49 +1.0
134,169 - MPMX19_04742 0.49 +1.0
134,169 - MPMX19_04742 0.49 +0.3
134,169 - MPMX19_04742 0.49 -2.5
134,483 + MPMX19_04742 0.67 +1.9
134,483 + MPMX19_04742 0.67 +0.5
134,483 + MPMX19_04742 0.67 +0.6
134,483 + MPMX19_04742 0.67 -0.7
134,483 + MPMX19_04742 0.67 +0.7
134,483 + MPMX19_04742 0.67 +0.6
134,484 - MPMX19_04742 0.67 -0.6
134,484 - MPMX19_04742 0.67 +0.5
134,484 - MPMX19_04742 0.67 -0.5
134,484 - MPMX19_04742 0.67 +0.7
134,484 - MPMX19_04742 0.67 +0.2
134,484 - MPMX19_04742 0.67 +1.2
134,484 - MPMX19_04742 0.67 -1.0
134,525 + MPMX19_04742 0.70 +0.0
134,525 + MPMX19_04742 0.70 -2.0
134,525 + MPMX19_04742 0.70 +0.8
134,525 + MPMX19_04742 0.70 +0.1
134,526 - MPMX19_04742 0.70 +1.1
134,526 - MPMX19_04742 0.70 +0.8
134,526 - MPMX19_04742 0.70 -2.4
134,636 + MPMX19_04742 0.76 -0.3
134,637 - MPMX19_04742 0.76 +1.5
134,694 + MPMX19_04742 0.80 +1.0
134,744 + MPMX19_04742 0.83 +1.0
134,744 + MPMX19_04742 0.83 +0.0
134,744 + MPMX19_04742 0.83 +0.5
134,744 + MPMX19_04742 0.83 +0.1
134,744 + MPMX19_04742 0.83 -1.8
134,745 - MPMX19_04742 0.83 -2.4
134,745 - MPMX19_04742 0.83 -0.1
134,745 - MPMX19_04742 0.83 -0.3
134,745 - MPMX19_04742 0.83 -0.0
135,046 - +0.1
135,058 + +0.7
135,058 + +2.3
135,058 + -0.3
135,058 + +0.0
135,059 - -1.0
135,059 - +1.0
135,059 - -2.0
135,059 - -0.5
135,059 - +0.8
135,059 - -0.6
135,059 - -1.5
135,059 - +1.3
135,059 - -2.4
135,059 - +0.3
135,059 - +0.1
135,059 - +1.3
135,059 - +1.1
135,059 - +0.3
135,445 + MPMX19_04743 0.46 +0.0
135,445 + MPMX19_04743 0.46 +0.3
135,445 + MPMX19_04743 0.46 +0.6
135,446 - MPMX19_04743 0.46 +0.7
135,446 - MPMX19_04743 0.46 +0.6
135,664 + MPMX19_04743 0.71 +0.3
135,664 + MPMX19_04743 0.71 +0.3
135,664 + MPMX19_04743 0.71 -0.8
135,664 + MPMX19_04743 0.71 -0.2
135,665 - MPMX19_04743 0.71 -0.6
135,665 - MPMX19_04743 0.71 +0.1
135,665 - MPMX19_04743 0.71 -1.0
135,665 - MPMX19_04743 0.71 -0.3
135,697 + MPMX19_04743 0.74 +1.5
135,698 - MPMX19_04743 0.74 +1.3
135,877 + +1.9

Or see this region's nucleotide sequence