Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04402 and MPMX19_04403 are separated by 172 nucleotides MPMX19_04403 and MPMX19_04404 are separated by 73 nucleotides MPMX19_04404 and MPMX19_04405 are separated by 221 nucleotides MPMX19_04405 and MPMX19_04406 are separated by 146 nucleotides
MPMX19_04402: MPMX19_04402 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 768,841 to 769,539
_04402
MPMX19_04403: MPMX19_04403 - hypothetical protein, at 769,712 to 770,116
_04403
MPMX19_04404: MPMX19_04404 - tRNA-Pro, at 770,190 to 770,266
_04404
MPMX19_04405: MPMX19_04405 - tRNA-Pro, at 770,488 to 770,564
_04405
MPMX19_04406: MPMX19_04406 - Octaprenyl diphosphate synthase, at 770,711 to 771,727
_04406
Position (kb) 769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.732 kb on + strand at 768.733 kb on - strand at 768.733 kb on - strand at 768.850 kb on + strand at 768.850 kb on + strand at 768.851 kb on - strand at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.471 kb on + strand at 769.471 kb on + strand at 769.471 kb on + strand at 769.472 kb on - strand at 769.588 kb on - strand at 769.602 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.728 kb on + strand at 769.728 kb on + strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.730 kb on + strand at 769.730 kb on + strand at 769.731 kb on - strand at 769.731 kb on - strand at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.983 kb on - strand, within MPMX19_04403 at 770.012 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.130 kb on - strand at 770.189 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.324 kb on + strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.396 kb on + strand at 770.487 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.593 kb on - strand at 770.622 kb on + strand at 770.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 768,722 + -1.5 768,722 + -1.0 768,722 + +0.9 768,722 + +0.4 768,722 + -0.0 768,722 + -0.5 768,722 + -0.1 768,722 + -0.7 768,723 - -1.0 768,723 - -0.2 768,723 - -1.4 768,723 - -0.3 768,732 + -0.1 768,733 - +0.3 768,733 - -1.2 768,850 + +0.5 768,850 + +0.2 768,851 - +0.2 768,946 + MPMX19_04402 0.15 -0.7 768,946 + MPMX19_04402 0.15 -1.7 768,946 + MPMX19_04402 0.15 -0.8 768,946 + MPMX19_04402 0.15 -0.7 768,947 - MPMX19_04402 0.15 -0.8 768,947 - MPMX19_04402 0.15 +0.5 768,947 - MPMX19_04402 0.15 +0.7 768,947 - MPMX19_04402 0.15 -0.8 768,947 - MPMX19_04402 0.15 -0.2 768,967 + MPMX19_04402 0.18 -0.5 768,967 + MPMX19_04402 0.18 +0.0 768,967 + MPMX19_04402 0.18 -0.4 768,967 + MPMX19_04402 0.18 -2.0 768,967 + MPMX19_04402 0.18 +0.1 768,968 - MPMX19_04402 0.18 -2.2 768,968 - MPMX19_04402 0.18 -1.7 769,120 + MPMX19_04402 0.40 +1.5 769,120 + MPMX19_04402 0.40 +0.2 769,120 + MPMX19_04402 0.40 -0.7 769,120 + MPMX19_04402 0.40 -1.1 769,120 + MPMX19_04402 0.40 -0.8 769,120 + MPMX19_04402 0.40 -0.3 769,120 + MPMX19_04402 0.40 -0.4 769,120 + MPMX19_04402 0.40 +0.2 769,120 + MPMX19_04402 0.40 +0.2 769,120 + MPMX19_04402 0.40 +0.2 769,120 + MPMX19_04402 0.40 +0.2 769,120 + MPMX19_04402 0.40 +0.1 769,121 - MPMX19_04402 0.40 -0.7 769,121 - MPMX19_04402 0.40 -0.2 769,121 - MPMX19_04402 0.40 +0.1 769,121 - MPMX19_04402 0.40 +1.5 769,121 - MPMX19_04402 0.40 -2.3 769,121 - MPMX19_04402 0.40 +0.1 769,121 - MPMX19_04402 0.40 +0.7 769,121 - MPMX19_04402 0.40 -0.8 769,147 + MPMX19_04402 0.44 -0.5 769,147 + MPMX19_04402 0.44 -1.8 769,147 + MPMX19_04402 0.44 -0.9 769,147 + MPMX19_04402 0.44 -0.8 769,147 + MPMX19_04402 0.44 +0.7 769,147 + MPMX19_04402 0.44 +0.9 769,147 + MPMX19_04402 0.44 +1.5 769,148 - MPMX19_04402 0.44 -1.1 769,148 - MPMX19_04402 0.44 -2.3 769,148 - MPMX19_04402 0.44 +0.2 769,148 - MPMX19_04402 0.44 +0.2 769,148 - MPMX19_04402 0.44 +0.4 769,148 - MPMX19_04402 0.44 -0.5 769,148 - MPMX19_04402 0.44 +0.4 769,148 - MPMX19_04402 0.44 -1.5 769,148 - MPMX19_04402 0.44 +0.5 769,148 - MPMX19_04402 0.44 -0.7 769,283 - MPMX19_04402 0.63 -0.7 769,283 - MPMX19_04402 0.63 -0.4 769,471 + -1.5 769,471 + +1.0 769,471 + -0.5 769,472 - +0.2 769,588 - -0.7 769,602 + -0.1 769,639 + -1.5 769,639 + -1.4 769,639 + -0.3 769,639 + -1.4 769,639 + -0.5 769,639 + -0.9 769,640 - -0.7 769,640 - +1.5 769,640 - +0.6 769,640 - +0.8 769,681 + -0.3 769,681 + -0.2 769,681 + -0.8 769,682 - -0.4 769,682 - -0.1 769,682 - -0.7 769,728 + -2.2 769,728 + -0.5 769,729 - -1.2 769,729 - +0.2 769,729 - -1.9 769,729 - -0.7 769,729 - -0.5 769,730 + -2.9 769,730 + -1.2 769,731 - +0.9 769,731 - +0.2 769,919 + MPMX19_04403 0.51 +0.7 769,919 + MPMX19_04403 0.51 -0.5 769,919 + MPMX19_04403 0.51 +2.5 769,919 + MPMX19_04403 0.51 -0.2 769,919 + MPMX19_04403 0.51 -0.1 769,919 + MPMX19_04403 0.51 -0.1 769,919 + MPMX19_04403 0.51 +0.3 769,919 + MPMX19_04403 0.51 +0.5 769,919 + MPMX19_04403 0.51 -1.7 769,920 - MPMX19_04403 0.51 +0.3 769,920 - MPMX19_04403 0.51 -1.7 769,924 + MPMX19_04403 0.52 -0.4 769,924 + MPMX19_04403 0.52 -0.2 769,925 - MPMX19_04403 0.53 +0.3 769,925 - MPMX19_04403 0.53 -1.5 769,983 - MPMX19_04403 0.67 +0.7 770,012 + MPMX19_04403 0.74 +0.4 770,036 + MPMX19_04403 0.80 -0.1 770,036 + MPMX19_04403 0.80 -1.2 770,036 + MPMX19_04403 0.80 +0.5 770,037 - MPMX19_04403 0.80 -0.2 770,037 - MPMX19_04403 0.80 +1.2 770,037 - MPMX19_04403 0.80 -0.5 770,037 - MPMX19_04403 0.80 +0.8 770,130 - +0.7 770,189 - +0.1 770,295 - +0.3 770,295 - -0.3 770,295 - +0.4 770,295 - -0.7 770,295 - +0.5 770,295 - -0.1 770,324 + +2.3 770,325 - +0.2 770,325 - +0.8 770,325 - -0.5 770,325 - +0.4 770,325 - +0.2 770,325 - -2.4 770,325 - -0.4 770,325 - +1.3 770,327 - +0.3 770,327 - -0.1 770,327 - +1.6 770,327 - +0.2 770,327 - -1.0 770,396 + -2.3 770,487 - +0.8 770,593 - -0.2 770,593 - +0.5 770,593 - +0.1 770,593 - -0.7 770,593 - -1.7 770,622 + -0.8 770,625 - -0.4
Or see this region's nucleotide sequence