Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04219

Experiment: NL-CCM; spin-x control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04218 and MPMX19_04219 are separated by 48 nucleotidesMPMX19_04219 and MPMX19_04220 are separated by 242 nucleotides MPMX19_04218: MPMX19_04218 - Protein phosphatase PrpC, at 557,723 to 558,538 _04218 MPMX19_04219: MPMX19_04219 - hypothetical protein, at 558,587 to 560,203 _04219 MPMX19_04220: MPMX19_04220 - Oligo-1,6-glucosidase 1, at 560,446 to 562,107 _04220 Position (kb) 558 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.059 kb on + strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.060 kb on - strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.146 kb on + strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.147 kb on - strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.182 kb on + strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.183 kb on - strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.233 kb on + strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.234 kb on - strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.240 kb on + strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218at 558.241 kb on - strand, within MPMX19_04218at 558.678 kb on + strandat 558.678 kb on + strandat 558.678 kb on + strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.679 kb on - strandat 558.762 kb on + strand, within MPMX19_04219at 558.763 kb on - strand, within MPMX19_04219at 558.763 kb on - strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.912 kb on + strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 558.913 kb on - strand, within MPMX19_04219at 559.241 kb on + strand, within MPMX19_04219at 559.242 kb on - strand, within MPMX19_04219at 559.242 kb on - strand, within MPMX19_04219at 559.498 kb on + strand, within MPMX19_04219at 560.244 kb on + strandat 560.244 kb on + strandat 560.244 kb on + strandat 560.244 kb on + strandat 560.244 kb on + strandat 560.245 kb on - strandat 560.292 kb on - strandat 560.515 kb on + strandat 560.515 kb on + strandat 560.515 kb on + strandat 560.515 kb on + strandat 560.515 kb on + strandat 560.516 kb on - strandat 560.516 kb on - strandat 560.524 kb on + strandat 560.524 kb on + strandat 560.524 kb on + strandat 560.525 kb on - strandat 560.525 kb on - strandat 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.641 kb on + strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.642 kb on - strand, within MPMX19_04220at 560.668 kb on + strand, within MPMX19_04220at 560.668 kb on + strand, within MPMX19_04220at 560.668 kb on + strand, within MPMX19_04220at 560.668 kb on + strand, within MPMX19_04220at 560.668 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.857 kb on + strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.858 kb on - strand, within MPMX19_04220at 560.956 kb on + strand, within MPMX19_04220at 560.956 kb on + strand, within MPMX19_04220at 560.956 kb on + strand, within MPMX19_04220at 560.956 kb on + strand, within MPMX19_04220at 560.956 kb on + strand, within MPMX19_04220at 560.957 kb on - strand, within MPMX19_04220at 560.957 kb on - strand, within MPMX19_04220at 560.957 kb on - strand, within MPMX19_04220at 560.957 kb on - strand, within MPMX19_04220at 560.957 kb on - strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.959 kb on + strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 560.960 kb on - strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.187 kb on + strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220at 561.188 kb on - strand, within MPMX19_04220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
remove
558,059 + MPMX19_04218 0.41 +0.8
558,059 + MPMX19_04218 0.41 -1.4
558,059 + MPMX19_04218 0.41 +0.1
558,059 + MPMX19_04218 0.41 +1.3
558,059 + MPMX19_04218 0.41 -0.3
558,060 - MPMX19_04218 0.41 -0.0
558,060 - MPMX19_04218 0.41 -2.6
558,060 - MPMX19_04218 0.41 -0.5
558,146 + MPMX19_04218 0.52 -1.1
558,146 + MPMX19_04218 0.52 +1.4
558,146 + MPMX19_04218 0.52 -1.7
558,146 + MPMX19_04218 0.52 -0.6
558,146 + MPMX19_04218 0.52 +1.0
558,146 + MPMX19_04218 0.52 +0.2
558,146 + MPMX19_04218 0.52 -1.7
558,146 + MPMX19_04218 0.52 -0.4
558,147 - MPMX19_04218 0.52 -0.3
558,147 - MPMX19_04218 0.52 +1.3
558,147 - MPMX19_04218 0.52 -0.8
558,147 - MPMX19_04218 0.52 -1.0
558,147 - MPMX19_04218 0.52 -0.1
558,147 - MPMX19_04218 0.52 -0.6
558,182 + MPMX19_04218 0.56 -0.4
558,182 + MPMX19_04218 0.56 +0.8
558,182 + MPMX19_04218 0.56 -2.1
558,182 + MPMX19_04218 0.56 -1.1
558,183 - MPMX19_04218 0.56 -1.1
558,183 - MPMX19_04218 0.56 -1.3
558,233 + MPMX19_04218 0.62 -2.0
558,233 + MPMX19_04218 0.62 -2.5
558,234 - MPMX19_04218 0.63 -0.3
558,234 - MPMX19_04218 0.63 +2.0
558,234 - MPMX19_04218 0.63 +0.5
558,240 + MPMX19_04218 0.63 -2.8
558,240 + MPMX19_04218 0.63 -0.4
558,240 + MPMX19_04218 0.63 -2.1
558,241 - MPMX19_04218 0.63 -0.1
558,241 - MPMX19_04218 0.63 -0.9
558,678 + -0.6
558,678 + -0.4
558,678 + +0.6
558,679 - +1.0
558,679 - -0.3
558,679 - -1.2
558,679 - -0.5
558,679 - -1.0
558,762 + MPMX19_04219 0.11 +0.3
558,763 - MPMX19_04219 0.11 -0.4
558,763 - MPMX19_04219 0.11 -0.2
558,912 + MPMX19_04219 0.20 -0.1
558,912 + MPMX19_04219 0.20 +0.3
558,912 + MPMX19_04219 0.20 -1.9
558,913 - MPMX19_04219 0.20 -0.9
558,913 - MPMX19_04219 0.20 +0.2
558,913 - MPMX19_04219 0.20 -0.8
558,913 - MPMX19_04219 0.20 -2.9
558,913 - MPMX19_04219 0.20 +0.4
559,241 + MPMX19_04219 0.40 -2.6
559,242 - MPMX19_04219 0.41 -1.0
559,242 - MPMX19_04219 0.41 -0.1
559,498 + MPMX19_04219 0.56 -0.9
560,244 + -1.7
560,244 + +0.1
560,244 + -1.8
560,244 + -1.0
560,244 + +0.8
560,245 - +0.2
560,292 - -0.4
560,515 + -0.9
560,515 + -0.0
560,515 + +0.9
560,515 + -0.4
560,515 + +0.5
560,516 - +0.7
560,516 - -0.3
560,524 + -1.4
560,524 + +0.4
560,524 + -1.4
560,525 - -0.4
560,525 - -0.4
560,641 + MPMX19_04220 0.12 -0.5
560,641 + MPMX19_04220 0.12 -0.0
560,641 + MPMX19_04220 0.12 +1.0
560,641 + MPMX19_04220 0.12 -0.5
560,641 + MPMX19_04220 0.12 -0.4
560,641 + MPMX19_04220 0.12 +0.3
560,641 + MPMX19_04220 0.12 -1.3
560,642 - MPMX19_04220 0.12 -1.6
560,642 - MPMX19_04220 0.12 -0.0
560,642 - MPMX19_04220 0.12 +0.9
560,642 - MPMX19_04220 0.12 +0.7
560,642 - MPMX19_04220 0.12 +0.6
560,642 - MPMX19_04220 0.12 -0.3
560,668 + MPMX19_04220 0.13 -0.0
560,668 + MPMX19_04220 0.13 +0.3
560,668 + MPMX19_04220 0.13 +0.5
560,668 + MPMX19_04220 0.13 -1.4
560,668 + MPMX19_04220 0.13 -1.9
560,857 + MPMX19_04220 0.25 -0.8
560,857 + MPMX19_04220 0.25 -0.9
560,857 + MPMX19_04220 0.25 +1.1
560,857 + MPMX19_04220 0.25 +0.5
560,857 + MPMX19_04220 0.25 -1.4
560,857 + MPMX19_04220 0.25 +0.6
560,857 + MPMX19_04220 0.25 -1.0
560,857 + MPMX19_04220 0.25 -1.7
560,857 + MPMX19_04220 0.25 -0.5
560,857 + MPMX19_04220 0.25 -2.4
560,857 + MPMX19_04220 0.25 +0.0
560,857 + MPMX19_04220 0.25 -1.1
560,858 - MPMX19_04220 0.25 -1.1
560,858 - MPMX19_04220 0.25 -0.3
560,858 - MPMX19_04220 0.25 -1.2
560,858 - MPMX19_04220 0.25 -2.4
560,858 - MPMX19_04220 0.25 -1.6
560,858 - MPMX19_04220 0.25 +0.0
560,858 - MPMX19_04220 0.25 +0.6
560,858 - MPMX19_04220 0.25 +1.0
560,858 - MPMX19_04220 0.25 +0.4
560,858 - MPMX19_04220 0.25 -0.7
560,858 - MPMX19_04220 0.25 +0.1
560,858 - MPMX19_04220 0.25 -1.3
560,858 - MPMX19_04220 0.25 +0.4
560,858 - MPMX19_04220 0.25 -0.9
560,956 + MPMX19_04220 0.31 +0.6
560,956 + MPMX19_04220 0.31 +3.3
560,956 + MPMX19_04220 0.31 +0.0
560,956 + MPMX19_04220 0.31 +1.0
560,956 + MPMX19_04220 0.31 -0.1
560,957 - MPMX19_04220 0.31 +1.9
560,957 - MPMX19_04220 0.31 -1.7
560,957 - MPMX19_04220 0.31 -0.1
560,957 - MPMX19_04220 0.31 +0.2
560,957 - MPMX19_04220 0.31 +0.5
560,959 + MPMX19_04220 0.31 +0.5
560,959 + MPMX19_04220 0.31 +0.5
560,959 + MPMX19_04220 0.31 -0.4
560,959 + MPMX19_04220 0.31 +1.5
560,959 + MPMX19_04220 0.31 -0.9
560,959 + MPMX19_04220 0.31 +0.6
560,959 + MPMX19_04220 0.31 +0.0
560,959 + MPMX19_04220 0.31 -0.3
560,959 + MPMX19_04220 0.31 +0.8
560,959 + MPMX19_04220 0.31 +0.5
560,959 + MPMX19_04220 0.31 -0.6
560,959 + MPMX19_04220 0.31 +0.2
560,959 + MPMX19_04220 0.31 -0.0
560,959 + MPMX19_04220 0.31 -1.0
560,959 + MPMX19_04220 0.31 +0.2
560,960 - MPMX19_04220 0.31 -1.4
560,960 - MPMX19_04220 0.31 -3.1
560,960 - MPMX19_04220 0.31 -1.2
560,960 - MPMX19_04220 0.31 -0.4
560,960 - MPMX19_04220 0.31 -1.5
560,960 - MPMX19_04220 0.31 +1.5
560,960 - MPMX19_04220 0.31 -1.4
560,960 - MPMX19_04220 0.31 -0.8
560,960 - MPMX19_04220 0.31 +0.5
560,960 - MPMX19_04220 0.31 +0.0
560,960 - MPMX19_04220 0.31 +0.8
560,960 - MPMX19_04220 0.31 +0.2
560,960 - MPMX19_04220 0.31 -2.8
560,960 - MPMX19_04220 0.31 +0.6
561,187 + MPMX19_04220 0.45 +0.6
561,187 + MPMX19_04220 0.45 +0.3
561,187 + MPMX19_04220 0.45 +0.0
561,187 + MPMX19_04220 0.45 +0.3
561,187 + MPMX19_04220 0.45 -0.9
561,187 + MPMX19_04220 0.45 -0.1
561,187 + MPMX19_04220 0.45 -1.5
561,187 + MPMX19_04220 0.45 -0.6
561,187 + MPMX19_04220 0.45 +0.5
561,187 + MPMX19_04220 0.45 -1.8
561,187 + MPMX19_04220 0.45 -0.0
561,187 + MPMX19_04220 0.45 -2.5
561,187 + MPMX19_04220 0.45 -1.2
561,188 - MPMX19_04220 0.45 -0.7
561,188 - MPMX19_04220 0.45 -0.1
561,188 - MPMX19_04220 0.45 +1.7
561,188 - MPMX19_04220 0.45 -1.5
561,188 - MPMX19_04220 0.45 +1.1
561,188 - MPMX19_04220 0.45 -0.5
561,188 - MPMX19_04220 0.45 -0.4
561,188 - MPMX19_04220 0.45 +0.6
561,188 - MPMX19_04220 0.45 +0.7
561,188 - MPMX19_04220 0.45 -0.1
561,188 - MPMX19_04220 0.45 +2.5
561,188 - MPMX19_04220 0.45 -0.1
561,188 - MPMX19_04220 0.45 -0.9
561,188 - MPMX19_04220 0.45 -0.7
561,188 - MPMX19_04220 0.45 +0.1
561,188 - MPMX19_04220 0.45 -1.7
561,188 - MPMX19_04220 0.45 -0.5
561,188 - MPMX19_04220 0.45 +0.0
561,188 - MPMX19_04220 0.45 -0.5
561,188 - MPMX19_04220 0.45 +0.1

Or see this region's nucleotide sequence