Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04145

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04144 and MPMX19_04145 are separated by 116 nucleotidesMPMX19_04145 and MPMX19_04146 are separated by 71 nucleotides MPMX19_04144: MPMX19_04144 - putative manganese efflux pump MntP, at 455,919 to 456,521 _04144 MPMX19_04145: MPMX19_04145 - hypothetical protein, at 456,638 to 457,330 _04145 MPMX19_04146: MPMX19_04146 - L-lactate dehydrogenase, at 457,402 to 458,616 _04146 Position (kb) 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 455.639 kb on + strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.640 kb on - strandat 455.666 kb on + strandat 455.667 kb on - strandat 455.696 kb on + strandat 455.697 kb on - strandat 455.764 kb on + strandat 455.764 kb on + strandat 455.764 kb on + strandat 455.765 kb on - strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.766 kb on + strandat 455.767 kb on - strandat 455.767 kb on - strandat 455.767 kb on - strandat 455.788 kb on + strandat 455.789 kb on - strandat 455.873 kb on - strandat 455.975 kb on - strandat 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.138 kb on + strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.139 kb on - strand, within MPMX19_04144at 456.596 kb on + strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.599 kb on - strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.661 kb on + strandat 456.662 kb on - strandat 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.259 kb on + strand, within MPMX19_04145at 457.269 kb on - strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.328 kb on + strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.329 kb on - strandat 457.416 kb on + strandat 457.417 kb on - strandat 457.417 kb on - strandat 457.553 kb on + strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 457.554 kb on - strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.168 kb on + strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146at 458.169 kb on - strand, within MPMX19_04146

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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455,639 + -1.1
455,640 - -0.2
455,640 - +1.5
455,640 - +0.0
455,640 - +1.7
455,666 + +0.1
455,667 - -3.7
455,696 + -0.0
455,697 - +0.1
455,764 + -0.0
455,764 + -0.3
455,764 + -2.2
455,765 - -0.1
455,766 + +0.3
455,766 + -0.0
455,766 + -0.2
455,766 + +0.2
455,766 + -1.2
455,767 - -1.2
455,767 - +1.4
455,767 - -0.6
455,788 + -0.1
455,789 - +0.7
455,873 - +0.5
455,975 - +2.0
456,138 + MPMX19_04144 0.36 +0.0
456,138 + MPMX19_04144 0.36 -0.5
456,138 + MPMX19_04144 0.36 +2.2
456,138 + MPMX19_04144 0.36 -0.0
456,138 + MPMX19_04144 0.36 +1.3
456,138 + MPMX19_04144 0.36 +1.3
456,138 + MPMX19_04144 0.36 +0.4
456,138 + MPMX19_04144 0.36 -2.0
456,138 + MPMX19_04144 0.36 -0.2
456,138 + MPMX19_04144 0.36 -1.3
456,138 + MPMX19_04144 0.36 +0.4
456,138 + MPMX19_04144 0.36 -0.7
456,138 + MPMX19_04144 0.36 -0.1
456,138 + MPMX19_04144 0.36 -0.5
456,138 + MPMX19_04144 0.36 -0.0
456,138 + MPMX19_04144 0.36 +0.7
456,138 + MPMX19_04144 0.36 +0.3
456,138 + MPMX19_04144 0.36 -1.6
456,138 + MPMX19_04144 0.36 +0.0
456,138 + MPMX19_04144 0.36 -1.4
456,138 + MPMX19_04144 0.36 +0.4
456,139 - MPMX19_04144 0.36 +0.1
456,139 - MPMX19_04144 0.36 +0.1
456,139 - MPMX19_04144 0.36 -0.2
456,139 - MPMX19_04144 0.36 +0.2
456,139 - MPMX19_04144 0.36 +1.4
456,139 - MPMX19_04144 0.36 +0.2
456,139 - MPMX19_04144 0.36 +0.6
456,139 - MPMX19_04144 0.36 -0.4
456,139 - MPMX19_04144 0.36 -1.1
456,139 - MPMX19_04144 0.36 -0.3
456,139 - MPMX19_04144 0.36 -0.6
456,139 - MPMX19_04144 0.36 -0.6
456,139 - MPMX19_04144 0.36 -0.7
456,596 + -0.9
456,599 - +0.8
456,599 - -0.1
456,599 - -1.4
456,661 + -1.0
456,661 + -0.2
456,661 + +0.0
456,662 - +0.0
457,259 + MPMX19_04145 0.90 -1.0
457,259 + MPMX19_04145 0.90 -0.0
457,259 + MPMX19_04145 0.90 -0.2
457,259 + MPMX19_04145 0.90 -1.4
457,259 + MPMX19_04145 0.90 -1.0
457,269 - +0.7
457,328 + +0.8
457,328 + -0.2
457,328 + -1.8
457,329 - -0.4
457,329 - +1.0
457,329 - -0.3
457,329 - -0.1
457,329 - -0.6
457,329 - +1.0
457,416 + +0.2
457,417 - -0.4
457,417 - +1.0
457,553 + MPMX19_04146 0.12 -0.3
457,554 - MPMX19_04146 0.13 +0.4
457,554 - MPMX19_04146 0.13 +0.4
457,554 - MPMX19_04146 0.13 +0.9
457,554 - MPMX19_04146 0.13 +0.8
457,554 - MPMX19_04146 0.13 -0.3
458,168 + MPMX19_04146 0.63 -1.5
458,168 + MPMX19_04146 0.63 -1.0
458,168 + MPMX19_04146 0.63 +0.4
458,168 + MPMX19_04146 0.63 +1.2
458,168 + MPMX19_04146 0.63 +0.5
458,168 + MPMX19_04146 0.63 -1.0
458,168 + MPMX19_04146 0.63 -0.8
458,168 + MPMX19_04146 0.63 -2.0
458,169 - MPMX19_04146 0.63 +1.2
458,169 - MPMX19_04146 0.63 +0.4
458,169 - MPMX19_04146 0.63 -0.9
458,169 - MPMX19_04146 0.63 +0.5
458,169 - MPMX19_04146 0.63 +0.4
458,169 - MPMX19_04146 0.63 -0.3
458,169 - MPMX19_04146 0.63 +0.1
458,169 - MPMX19_04146 0.63 +1.2
458,169 - MPMX19_04146 0.63 -1.0
458,169 - MPMX19_04146 0.63 -0.1
458,169 - MPMX19_04146 0.63 -1.6

Or see this region's nucleotide sequence