Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04079

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04077 and MPMX19_04078 are separated by 22 nucleotidesMPMX19_04078 and MPMX19_04079 are separated by 4 nucleotidesMPMX19_04079 and MPMX19_04080 are separated by 215 nucleotidesMPMX19_04080 and MPMX19_04081 are separated by 12 nucleotidesMPMX19_04081 and MPMX19_04082 are separated by 24 nucleotides MPMX19_04077: MPMX19_04077 - Adaptive-response sensory-kinase SasA, at 383,412 to 384,773 _04077 MPMX19_04078: MPMX19_04078 - Virulence transcriptional regulatory protein PhoP, at 384,796 to 385,455 _04078 MPMX19_04079: MPMX19_04079 - hypothetical protein, at 385,460 to 385,783 _04079 MPMX19_04080: MPMX19_04080 - hypothetical protein, at 385,999 to 386,433 _04080 MPMX19_04081: MPMX19_04081 - hypothetical protein, at 386,446 to 386,577 _04081 MPMX19_04082: MPMX19_04082 - hypothetical protein, at 386,602 to 387,138 _04082 Position (kb) 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.523 kb on + strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.524 kb on - strand, within MPMX19_04077at 384.815 kb on + strandat 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.920 kb on + strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.921 kb on - strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.977 kb on + strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 384.978 kb on - strand, within MPMX19_04078at 385.163 kb on + strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.164 kb on - strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.322 kb on + strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.323 kb on - strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.382 kb on + strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.383 kb on - strand, within MPMX19_04078at 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.461 kb on + strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.462 kb on - strandat 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.527 kb on + strand, within MPMX19_04079at 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.842 kb on + strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 385.843 kb on - strandat 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.512 kb on + strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.513 kb on - strand, within MPMX19_04081at 386.583 kb on + strandat 386.583 kb on + strandat 386.583 kb on + strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.584 kb on - strandat 386.686 kb on + strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.687 kb on - strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.710 kb on + strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.711 kb on - strand, within MPMX19_04082at 386.734 kb on + strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082at 386.735 kb on - strand, within MPMX19_04082

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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384,523 + MPMX19_04077 0.82 +0.3
384,523 + MPMX19_04077 0.82 +0.2
384,523 + MPMX19_04077 0.82 +0.4
384,524 - MPMX19_04077 0.82 -1.1
384,524 - MPMX19_04077 0.82 -0.9
384,524 - MPMX19_04077 0.82 +0.5
384,524 - MPMX19_04077 0.82 +0.6
384,815 + -1.1
384,920 + MPMX19_04078 0.19 +1.8
384,920 + MPMX19_04078 0.19 +0.7
384,920 + MPMX19_04078 0.19 -1.6
384,920 + MPMX19_04078 0.19 -1.1
384,920 + MPMX19_04078 0.19 -0.4
384,920 + MPMX19_04078 0.19 -0.4
384,920 + MPMX19_04078 0.19 +1.1
384,920 + MPMX19_04078 0.19 -0.5
384,920 + MPMX19_04078 0.19 -2.0
384,921 - MPMX19_04078 0.19 -0.9
384,921 - MPMX19_04078 0.19 +0.2
384,921 - MPMX19_04078 0.19 -0.9
384,921 - MPMX19_04078 0.19 -1.7
384,921 - MPMX19_04078 0.19 +0.6
384,921 - MPMX19_04078 0.19 -1.2
384,921 - MPMX19_04078 0.19 -1.5
384,977 + MPMX19_04078 0.27 +1.0
384,977 + MPMX19_04078 0.27 +0.5
384,977 + MPMX19_04078 0.27 -0.1
384,977 + MPMX19_04078 0.27 -0.1
384,977 + MPMX19_04078 0.27 -2.1
384,978 - MPMX19_04078 0.28 -0.6
384,978 - MPMX19_04078 0.28 -1.2
384,978 - MPMX19_04078 0.28 -0.5
384,978 - MPMX19_04078 0.28 -1.8
384,978 - MPMX19_04078 0.28 -0.6
384,978 - MPMX19_04078 0.28 -0.6
384,978 - MPMX19_04078 0.28 -2.0
384,978 - MPMX19_04078 0.28 -1.7
384,978 - MPMX19_04078 0.28 -3.0
385,163 + MPMX19_04078 0.56 -2.4
385,164 - MPMX19_04078 0.56 -1.2
385,164 - MPMX19_04078 0.56 -2.1
385,322 + MPMX19_04078 0.80 -1.4
385,322 + MPMX19_04078 0.80 +0.0
385,322 + MPMX19_04078 0.80 +1.7
385,323 - MPMX19_04078 0.80 +1.1
385,323 - MPMX19_04078 0.80 +0.6
385,323 - MPMX19_04078 0.80 -0.5
385,323 - MPMX19_04078 0.80 +0.4
385,323 - MPMX19_04078 0.80 -2.7
385,323 - MPMX19_04078 0.80 -0.1
385,323 - MPMX19_04078 0.80 -0.0
385,382 + MPMX19_04078 0.89 +0.0
385,382 + MPMX19_04078 0.89 +1.8
385,383 - MPMX19_04078 0.89 -0.8
385,383 - MPMX19_04078 0.89 -0.3
385,383 - MPMX19_04078 0.89 +1.7
385,383 - MPMX19_04078 0.89 -2.4
385,461 + -0.9
385,461 + +1.6
385,461 + +0.1
385,461 + -0.0
385,461 + +0.3
385,461 + -1.7
385,461 + -0.7
385,461 + -1.2
385,461 + -0.4
385,462 - -0.0
385,462 - +0.3
385,462 - -0.8
385,462 - +1.1
385,462 - +0.2
385,462 - -2.7
385,462 - -1.8
385,462 - -0.6
385,462 - -0.4
385,527 + MPMX19_04079 0.21 -0.3
385,527 + MPMX19_04079 0.21 -0.7
385,527 + MPMX19_04079 0.21 -0.3
385,527 + MPMX19_04079 0.21 -2.0
385,842 + +0.2
385,842 + -1.8
385,842 + +0.7
385,842 + +0.2
385,842 + -1.2
385,843 - -2.0
385,843 - -1.2
385,843 - +0.1
385,843 - -0.7
385,843 - -0.2
385,843 - -2.2
385,843 - -1.2
386,512 + MPMX19_04081 0.50 -1.0
386,512 + MPMX19_04081 0.50 -0.0
386,512 + MPMX19_04081 0.50 -0.6
386,513 - MPMX19_04081 0.51 -0.7
386,513 - MPMX19_04081 0.51 +0.9
386,583 + +0.3
386,583 + -1.2
386,583 + +0.8
386,584 - +1.1
386,584 - -1.0
386,584 - +1.3
386,686 + MPMX19_04082 0.16 -2.3
386,687 - MPMX19_04082 0.16 +0.7
386,687 - MPMX19_04082 0.16 -0.1
386,687 - MPMX19_04082 0.16 -0.2
386,687 - MPMX19_04082 0.16 -1.5
386,687 - MPMX19_04082 0.16 +0.3
386,687 - MPMX19_04082 0.16 -0.9
386,687 - MPMX19_04082 0.16 +1.0
386,687 - MPMX19_04082 0.16 -1.1
386,687 - MPMX19_04082 0.16 +2.0
386,687 - MPMX19_04082 0.16 +0.1
386,710 + MPMX19_04082 0.20 -0.3
386,710 + MPMX19_04082 0.20 -0.4
386,710 + MPMX19_04082 0.20 -1.4
386,710 + MPMX19_04082 0.20 -0.6
386,710 + MPMX19_04082 0.20 +0.8
386,710 + MPMX19_04082 0.20 +1.8
386,710 + MPMX19_04082 0.20 +0.6
386,711 - MPMX19_04082 0.20 +1.4
386,711 - MPMX19_04082 0.20 -1.1
386,711 - MPMX19_04082 0.20 -0.4
386,711 - MPMX19_04082 0.20 -0.3
386,711 - MPMX19_04082 0.20 -0.6
386,711 - MPMX19_04082 0.20 +2.8
386,711 - MPMX19_04082 0.20 +0.9
386,711 - MPMX19_04082 0.20 +2.0
386,711 - MPMX19_04082 0.20 -0.4
386,711 - MPMX19_04082 0.20 +0.5
386,711 - MPMX19_04082 0.20 -0.6
386,734 + MPMX19_04082 0.25 +0.4
386,735 - MPMX19_04082 0.25 +0.9
386,735 - MPMX19_04082 0.25 +0.9

Or see this region's nucleotide sequence