Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03830 and MPMX19_03831 are separated by 3 nucleotides MPMX19_03831 and MPMX19_03832 are separated by 16 nucleotides MPMX19_03832 and MPMX19_03833 are separated by 112 nucleotides MPMX19_03833 and MPMX19_03834 are separated by 187 nucleotides MPMX19_03834 and MPMX19_03835 are separated by 56 nucleotides
MPMX19_03830: MPMX19_03830 - hypothetical protein, at 69,903 to 71,051
_03830
MPMX19_03831: MPMX19_03831 - Sulfate/thiosulfate import ATP-binding protein CysA, at 71,055 to 71,801
_03831
MPMX19_03832: MPMX19_03832 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 71,818 to 72,513
_03832
MPMX19_03833: MPMX19_03833 - hypothetical protein, at 72,626 to 73,021
_03833
MPMX19_03834: MPMX19_03834 - hypothetical protein, at 73,209 to 73,361
_03834
MPMX19_03835: MPMX19_03835 - Lipoprotein E, at 73,418 to 74,299
_03835
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.872 kb on + strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 70.873 kb on - strand, within MPMX19_03830 at 71.080 kb on - strand at 71.080 kb on - strand at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.412 kb on + strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.413 kb on - strand, within MPMX19_03831 at 71.783 kb on + strand at 71.783 kb on + strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.784 kb on - strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.787 kb on + strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.788 kb on - strand at 71.816 kb on + strand at 71.816 kb on + strand at 71.817 kb on - strand at 71.817 kb on - strand at 71.817 kb on - strand at 71.848 kb on + strand at 71.848 kb on + strand at 71.848 kb on + strand at 71.849 kb on - strand at 71.899 kb on - strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.055 kb on + strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.056 kb on - strand, within MPMX19_03832 at 72.119 kb on - strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.346 kb on + strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.347 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.392 kb on - strand, within MPMX19_03832 at 72.500 kb on - strand at 72.500 kb on - strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.509 kb on + strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.510 kb on - strand at 72.511 kb on + strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.512 kb on - strand at 72.552 kb on + strand at 72.553 kb on - strand at 72.553 kb on - strand at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.776 kb on + strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.777 kb on - strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.881 kb on + strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.882 kb on - strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.923 kb on + strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.924 kb on - strand, within MPMX19_03833 at 72.941 kb on + strand, within MPMX19_03833 at 72.941 kb on + strand, within MPMX19_03833 at 72.942 kb on - strand, within MPMX19_03833 at 73.048 kb on + strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.049 kb on - strand at 73.088 kb on - strand at 73.089 kb on + strand at 73.089 kb on + strand at 73.089 kb on + strand at 73.090 kb on - strand at 73.094 kb on - strand at 73.094 kb on - strand at 73.107 kb on - strand at 73.142 kb on + strand at 73.143 kb on - strand at 73.218 kb on + strand at 73.218 kb on + strand at 73.218 kb on + strand at 73.219 kb on - strand at 73.219 kb on - strand at 73.219 kb on - strand at 73.403 kb on + strand at 73.403 kb on + strand at 73.403 kb on + strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.404 kb on - strand at 73.420 kb on - strand at 73.495 kb on + strand at 73.496 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 70,872 + MPMX19_03830 0.84 -0.5 70,872 + MPMX19_03830 0.84 -0.6 70,872 + MPMX19_03830 0.84 +0.2 70,872 + MPMX19_03830 0.84 -0.9 70,872 + MPMX19_03830 0.84 -0.2 70,872 + MPMX19_03830 0.84 +0.0 70,872 + MPMX19_03830 0.84 -1.6 70,872 + MPMX19_03830 0.84 -0.1 70,872 + MPMX19_03830 0.84 +1.1 70,872 + MPMX19_03830 0.84 -1.8 70,872 + MPMX19_03830 0.84 +0.7 70,872 + MPMX19_03830 0.84 -1.0 70,873 - MPMX19_03830 0.84 -1.8 70,873 - MPMX19_03830 0.84 -0.2 70,873 - MPMX19_03830 0.84 +0.5 70,873 - MPMX19_03830 0.84 +0.3 70,873 - MPMX19_03830 0.84 +0.2 70,873 - MPMX19_03830 0.84 +0.9 70,873 - MPMX19_03830 0.84 +0.7 70,873 - MPMX19_03830 0.84 -0.1 70,873 - MPMX19_03830 0.84 -0.1 71,080 - -2.3 71,080 - -1.5 71,412 + MPMX19_03831 0.48 -0.6 71,412 + MPMX19_03831 0.48 -0.0 71,412 + MPMX19_03831 0.48 +0.8 71,412 + MPMX19_03831 0.48 +0.8 71,412 + MPMX19_03831 0.48 -0.9 71,412 + MPMX19_03831 0.48 +0.3 71,413 - MPMX19_03831 0.48 -1.0 71,413 - MPMX19_03831 0.48 +0.3 71,413 - MPMX19_03831 0.48 -0.2 71,413 - MPMX19_03831 0.48 -1.0 71,413 - MPMX19_03831 0.48 -1.0 71,413 - MPMX19_03831 0.48 -1.3 71,413 - MPMX19_03831 0.48 -2.0 71,413 - MPMX19_03831 0.48 -1.0 71,413 - MPMX19_03831 0.48 +0.9 71,783 + +0.2 71,783 + -0.6 71,784 - -0.9 71,784 - +0.3 71,784 - +0.2 71,784 - -0.4 71,784 - -0.5 71,784 - -0.9 71,784 - +0.7 71,784 - +0.2 71,784 - -0.5 71,787 + -0.5 71,787 + +0.1 71,787 + -0.8 71,787 + -0.8 71,787 + +1.2 71,787 + +0.6 71,787 + +1.2 71,787 + +0.1 71,787 + -1.2 71,787 + -0.2 71,787 + +1.1 71,787 + -2.9 71,788 - +1.1 71,788 - -0.9 71,788 - +2.1 71,788 - -1.1 71,788 - +0.1 71,788 - +0.4 71,788 - +1.7 71,788 - +1.5 71,816 + -1.0 71,816 + -0.5 71,817 - +0.3 71,817 - +0.3 71,817 - -0.6 71,848 + -1.1 71,848 + +0.2 71,848 + -1.8 71,849 - +0.4 71,899 - MPMX19_03832 0.12 -1.8 72,055 + MPMX19_03832 0.34 +0.3 72,055 + MPMX19_03832 0.34 +0.1 72,055 + MPMX19_03832 0.34 -2.7 72,055 + MPMX19_03832 0.34 -1.5 72,055 + MPMX19_03832 0.34 -0.8 72,055 + MPMX19_03832 0.34 +0.5 72,055 + MPMX19_03832 0.34 +0.1 72,055 + MPMX19_03832 0.34 -2.4 72,055 + MPMX19_03832 0.34 -0.6 72,055 + MPMX19_03832 0.34 -1.0 72,055 + MPMX19_03832 0.34 +0.7 72,055 + MPMX19_03832 0.34 -1.3 72,055 + MPMX19_03832 0.34 +1.3 72,055 + MPMX19_03832 0.34 +0.0 72,056 - MPMX19_03832 0.34 +0.4 72,056 - MPMX19_03832 0.34 -0.5 72,056 - MPMX19_03832 0.34 -0.9 72,056 - MPMX19_03832 0.34 -0.5 72,056 - MPMX19_03832 0.34 +0.2 72,056 - MPMX19_03832 0.34 +0.8 72,056 - MPMX19_03832 0.34 -0.1 72,056 - MPMX19_03832 0.34 -0.2 72,056 - MPMX19_03832 0.34 -0.5 72,056 - MPMX19_03832 0.34 -1.1 72,056 - MPMX19_03832 0.34 -0.2 72,056 - MPMX19_03832 0.34 -0.8 72,056 - MPMX19_03832 0.34 +0.5 72,056 - MPMX19_03832 0.34 +0.4 72,056 - MPMX19_03832 0.34 -0.1 72,056 - MPMX19_03832 0.34 +0.3 72,119 - MPMX19_03832 0.43 +0.9 72,346 + MPMX19_03832 0.76 -0.7 72,346 + MPMX19_03832 0.76 +0.2 72,346 + MPMX19_03832 0.76 -1.5 72,346 + MPMX19_03832 0.76 -0.1 72,346 + MPMX19_03832 0.76 -0.1 72,346 + MPMX19_03832 0.76 +0.4 72,346 + MPMX19_03832 0.76 -0.5 72,346 + MPMX19_03832 0.76 +0.8 72,347 - MPMX19_03832 0.76 -0.1 72,347 - MPMX19_03832 0.76 -1.1 72,347 - MPMX19_03832 0.76 -0.0 72,392 - MPMX19_03832 0.82 -1.1 72,392 - MPMX19_03832 0.82 +0.3 72,392 - MPMX19_03832 0.82 -0.6 72,500 - -0.1 72,500 - -0.1 72,509 + -1.5 72,509 + +0.7 72,509 + +0.2 72,509 + -0.8 72,509 + -0.8 72,509 + -1.2 72,509 + +0.8 72,509 + -0.5 72,509 + +0.5 72,509 + -0.6 72,509 + -2.7 72,510 - -0.1 72,510 - +0.2 72,510 - -2.3 72,510 - +1.0 72,510 - -0.4 72,510 - +0.5 72,510 - +0.9 72,510 - -1.8 72,510 - -1.7 72,511 + -1.6 72,512 - +0.4 72,512 - -0.8 72,512 - +0.5 72,512 - +0.1 72,512 - -0.1 72,512 - -0.3 72,552 + -0.9 72,553 - +0.4 72,553 - -2.1 72,776 + MPMX19_03833 0.38 +1.0 72,776 + MPMX19_03833 0.38 -0.1 72,776 + MPMX19_03833 0.38 -1.1 72,776 + MPMX19_03833 0.38 -0.0 72,776 + MPMX19_03833 0.38 +0.0 72,776 + MPMX19_03833 0.38 -0.3 72,776 + MPMX19_03833 0.38 -0.2 72,776 + MPMX19_03833 0.38 -0.1 72,776 + MPMX19_03833 0.38 -1.6 72,777 - MPMX19_03833 0.38 -1.5 72,777 - MPMX19_03833 0.38 +0.5 72,777 - MPMX19_03833 0.38 +1.4 72,777 - MPMX19_03833 0.38 -1.5 72,777 - MPMX19_03833 0.38 +0.1 72,777 - MPMX19_03833 0.38 -0.6 72,777 - MPMX19_03833 0.38 +0.2 72,777 - MPMX19_03833 0.38 -0.7 72,777 - MPMX19_03833 0.38 +0.5 72,777 - MPMX19_03833 0.38 -1.3 72,777 - MPMX19_03833 0.38 +0.9 72,777 - MPMX19_03833 0.38 +0.8 72,777 - MPMX19_03833 0.38 -2.0 72,777 - MPMX19_03833 0.38 +2.2 72,881 + MPMX19_03833 0.64 +0.3 72,881 + MPMX19_03833 0.64 -0.5 72,881 + MPMX19_03833 0.64 -0.1 72,881 + MPMX19_03833 0.64 +1.0 72,881 + MPMX19_03833 0.64 +0.5 72,881 + MPMX19_03833 0.64 -1.7 72,881 + MPMX19_03833 0.64 -0.1 72,881 + MPMX19_03833 0.64 +2.1 72,882 - MPMX19_03833 0.65 +0.5 72,882 - MPMX19_03833 0.65 -1.7 72,882 - MPMX19_03833 0.65 -1.5 72,882 - MPMX19_03833 0.65 -0.8 72,882 - MPMX19_03833 0.65 -2.1 72,923 + MPMX19_03833 0.75 -0.3 72,923 + MPMX19_03833 0.75 +0.7 72,923 + MPMX19_03833 0.75 +0.5 72,923 + MPMX19_03833 0.75 +0.9 72,923 + MPMX19_03833 0.75 -0.9 72,924 - MPMX19_03833 0.75 +0.3 72,924 - MPMX19_03833 0.75 -0.5 72,924 - MPMX19_03833 0.75 -0.7 72,924 - MPMX19_03833 0.75 -0.5 72,924 - MPMX19_03833 0.75 -2.3 72,941 + MPMX19_03833 0.80 +0.2 72,941 + MPMX19_03833 0.80 -2.3 72,942 - MPMX19_03833 0.80 +0.5 73,048 + +0.3 73,049 - -1.1 73,049 - -1.1 73,049 - +0.5 73,049 - -0.6 73,088 - +0.6 73,089 + -2.8 73,089 + -0.5 73,089 + -0.1 73,090 - -1.1 73,094 - -0.7 73,094 - -1.0 73,107 - -1.0 73,142 + +1.0 73,143 - -1.0 73,218 + +0.7 73,218 + -1.0 73,218 + -0.5 73,219 - +0.7 73,219 - +0.1 73,219 - -1.5 73,403 + +0.6 73,403 + -0.3 73,403 + -3.1 73,404 - -0.4 73,404 - -0.3 73,404 - -0.8 73,404 - -0.1 73,404 - -0.6 73,404 - -2.1 73,420 - +0.9 73,495 + -1.8 73,496 - +0.7
Or see this region's nucleotide sequence