Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03810

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03809 and MPMX19_03810 are separated by 2 nucleotidesMPMX19_03810 and MPMX19_03811 overlap by 1 nucleotides MPMX19_03809: MPMX19_03809 - hypothetical protein, at 41,181 to 47,519 _03809 MPMX19_03810: MPMX19_03810 - hypothetical protein, at 47,522 to 47,917 _03810 MPMX19_03811: MPMX19_03811 - hypothetical protein, at 47,917 to 49,011 _03811 Position (kb) 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 46.617 kb on + strand, within MPMX19_03809at 46.617 kb on + strand, within MPMX19_03809at 46.617 kb on + strand, within MPMX19_03809at 46.617 kb on + strand, within MPMX19_03809at 46.617 kb on + strand, within MPMX19_03809at 46.617 kb on + strand, within MPMX19_03809at 46.618 kb on - strand, within MPMX19_03809at 46.618 kb on - strand, within MPMX19_03809at 46.618 kb on - strand, within MPMX19_03809at 46.618 kb on - strand, within MPMX19_03809at 46.618 kb on - strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.644 kb on + strand, within MPMX19_03809at 46.645 kb on - strand, within MPMX19_03809at 46.645 kb on - strand, within MPMX19_03809at 46.645 kb on - strand, within MPMX19_03809at 46.645 kb on - strand, within MPMX19_03809at 46.682 kb on + strand, within MPMX19_03809at 46.683 kb on - strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.685 kb on + strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.686 kb on - strand, within MPMX19_03809at 46.794 kb on + strand, within MPMX19_03809at 46.794 kb on + strand, within MPMX19_03809at 46.795 kb on - strand, within MPMX19_03809at 46.808 kb on + strand, within MPMX19_03809at 46.836 kb on + strand, within MPMX19_03809at 46.836 kb on + strand, within MPMX19_03809at 46.836 kb on + strand, within MPMX19_03809at 46.836 kb on + strand, within MPMX19_03809at 46.836 kb on + strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.837 kb on - strand, within MPMX19_03809at 46.915 kb on + strandat 46.916 kb on - strandat 46.916 kb on - strandat 46.916 kb on - strandat 46.970 kb on + strandat 46.970 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.058 kb on + strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.059 kb on - strandat 47.496 kb on + strandat 47.496 kb on + strandat 47.496 kb on + strandat 47.496 kb on + strandat 47.497 kb on - strandat 47.517 kb on + strandat 47.517 kb on + strandat 47.517 kb on + strandat 47.517 kb on + strandat 47.518 kb on - strandat 47.518 kb on - strandat 47.518 kb on - strandat 47.537 kb on + strandat 47.537 kb on + strandat 47.538 kb on - strandat 47.538 kb on - strandat 47.538 kb on - strandat 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.582 kb on + strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.583 kb on - strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.584 kb on + strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.585 kb on - strand, within MPMX19_03810at 47.603 kb on + strand, within MPMX19_03810at 47.603 kb on + strand, within MPMX19_03810at 47.603 kb on + strand, within MPMX19_03810at 47.603 kb on + strand, within MPMX19_03810at 47.603 kb on + strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.604 kb on - strand, within MPMX19_03810at 47.692 kb on + strand, within MPMX19_03810at 47.692 kb on + strand, within MPMX19_03810at 47.692 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.701 kb on + strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.702 kb on - strand, within MPMX19_03810at 47.851 kb on + strand, within MPMX19_03810at 47.851 kb on + strand, within MPMX19_03810at 47.851 kb on + strand, within MPMX19_03810at 47.851 kb on + strand, within MPMX19_03810at 47.852 kb on - strand, within MPMX19_03810at 47.852 kb on - strand, within MPMX19_03810at 47.852 kb on - strand, within MPMX19_03810at 47.977 kb on + strandat 47.977 kb on + strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.978 kb on - strandat 47.996 kb on + strandat 47.997 kb on - strandat 48.040 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.305 kb on + strand, within MPMX19_03811at 48.306 kb on - strand, within MPMX19_03811at 48.306 kb on - strand, within MPMX19_03811at 48.405 kb on + strand, within MPMX19_03811at 48.615 kb on + strand, within MPMX19_03811at 48.615 kb on + strand, within MPMX19_03811at 48.731 kb on + strand, within MPMX19_03811at 48.732 kb on - strand, within MPMX19_03811at 48.732 kb on - strand, within MPMX19_03811at 48.854 kb on + strand, within MPMX19_03811at 48.855 kb on - strand, within MPMX19_03811at 48.855 kb on - strand, within MPMX19_03811at 48.855 kb on - strand, within MPMX19_03811at 48.916 kb on + strandat 48.917 kb on - strandat 48.917 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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46,617 + MPMX19_03809 0.86 -0.4
46,617 + MPMX19_03809 0.86 -2.4
46,617 + MPMX19_03809 0.86 +0.8
46,617 + MPMX19_03809 0.86 -0.7
46,617 + MPMX19_03809 0.86 -2.1
46,617 + MPMX19_03809 0.86 +0.5
46,618 - MPMX19_03809 0.86 -0.8
46,618 - MPMX19_03809 0.86 +0.8
46,618 - MPMX19_03809 0.86 -0.8
46,618 - MPMX19_03809 0.86 -0.8
46,618 - MPMX19_03809 0.86 +0.6
46,644 + MPMX19_03809 0.86 +0.3
46,644 + MPMX19_03809 0.86 +0.5
46,644 + MPMX19_03809 0.86 -0.1
46,644 + MPMX19_03809 0.86 +0.8
46,644 + MPMX19_03809 0.86 -1.2
46,644 + MPMX19_03809 0.86 -0.5
46,645 - MPMX19_03809 0.86 -1.4
46,645 - MPMX19_03809 0.86 +1.0
46,645 - MPMX19_03809 0.86 -0.5
46,645 - MPMX19_03809 0.86 +0.9
46,682 + MPMX19_03809 0.87 -0.8
46,683 - MPMX19_03809 0.87 +0.5
46,685 + MPMX19_03809 0.87 -2.8
46,685 + MPMX19_03809 0.87 -1.3
46,685 + MPMX19_03809 0.87 -1.2
46,685 + MPMX19_03809 0.87 +0.1
46,685 + MPMX19_03809 0.87 -0.8
46,685 + MPMX19_03809 0.87 +0.1
46,685 + MPMX19_03809 0.87 -1.5
46,685 + MPMX19_03809 0.87 +1.3
46,685 + MPMX19_03809 0.87 -1.7
46,685 + MPMX19_03809 0.87 -1.8
46,685 + MPMX19_03809 0.87 -0.3
46,685 + MPMX19_03809 0.87 -0.2
46,685 + MPMX19_03809 0.87 +0.5
46,685 + MPMX19_03809 0.87 -0.1
46,686 - MPMX19_03809 0.87 -2.2
46,686 - MPMX19_03809 0.87 +0.2
46,686 - MPMX19_03809 0.87 -0.6
46,686 - MPMX19_03809 0.87 -0.1
46,686 - MPMX19_03809 0.87 +1.5
46,686 - MPMX19_03809 0.87 -1.9
46,686 - MPMX19_03809 0.87 +0.3
46,686 - MPMX19_03809 0.87 -0.4
46,686 - MPMX19_03809 0.87 -1.7
46,686 - MPMX19_03809 0.87 -0.5
46,686 - MPMX19_03809 0.87 -0.4
46,794 + MPMX19_03809 0.89 -0.8
46,794 + MPMX19_03809 0.89 +1.5
46,795 - MPMX19_03809 0.89 +1.2
46,808 + MPMX19_03809 0.89 +3.5
46,836 + MPMX19_03809 0.89 -0.3
46,836 + MPMX19_03809 0.89 -0.1
46,836 + MPMX19_03809 0.89 -0.5
46,836 + MPMX19_03809 0.89 -0.3
46,836 + MPMX19_03809 0.89 -1.7
46,837 - MPMX19_03809 0.89 -0.1
46,837 - MPMX19_03809 0.89 -1.3
46,837 - MPMX19_03809 0.89 -0.0
46,837 - MPMX19_03809 0.89 +0.6
46,837 - MPMX19_03809 0.89 +0.1
46,837 - MPMX19_03809 0.89 -0.1
46,915 + -0.5
46,916 - -2.9
46,916 - +2.1
46,916 - -0.5
46,970 + -1.8
46,970 + -1.4
47,058 + -0.2
47,058 + +0.8
47,058 + -0.7
47,058 + -1.5
47,058 + -0.8
47,058 + +0.7
47,058 + -0.0
47,058 + -1.2
47,058 + +0.1
47,058 + +0.5
47,058 + -0.2
47,059 - -2.5
47,059 - -0.0
47,059 - +0.3
47,059 - +0.8
47,059 - +0.6
47,059 - -0.5
47,059 - +0.2
47,059 - +1.3
47,059 - -0.8
47,059 - -2.5
47,059 - +0.6
47,059 - -0.1
47,059 - +0.5
47,059 - -0.7
47,059 - -0.4
47,059 - +1.1
47,496 + +0.5
47,496 + +1.5
47,496 + +0.3
47,496 + +0.6
47,497 - -0.7
47,517 + +0.1
47,517 + +0.3
47,517 + -2.0
47,517 + -0.6
47,518 - +1.0
47,518 - -1.2
47,518 - +0.4
47,537 + +0.7
47,537 + +1.2
47,538 - -1.7
47,538 - +0.3
47,538 - +0.3
47,582 + MPMX19_03810 0.15 +0.2
47,582 + MPMX19_03810 0.15 -1.7
47,582 + MPMX19_03810 0.15 +0.9
47,582 + MPMX19_03810 0.15 -2.2
47,582 + MPMX19_03810 0.15 -1.0
47,582 + MPMX19_03810 0.15 +1.1
47,582 + MPMX19_03810 0.15 -0.3
47,582 + MPMX19_03810 0.15 +1.0
47,583 - MPMX19_03810 0.15 +0.9
47,583 - MPMX19_03810 0.15 -0.1
47,583 - MPMX19_03810 0.15 +0.1
47,583 - MPMX19_03810 0.15 -2.3
47,583 - MPMX19_03810 0.15 +0.1
47,583 - MPMX19_03810 0.15 +0.3
47,584 + MPMX19_03810 0.16 -0.7
47,584 + MPMX19_03810 0.16 -0.2
47,584 + MPMX19_03810 0.16 -0.6
47,584 + MPMX19_03810 0.16 +0.3
47,584 + MPMX19_03810 0.16 -2.4
47,584 + MPMX19_03810 0.16 -1.0
47,584 + MPMX19_03810 0.16 -0.1
47,584 + MPMX19_03810 0.16 +0.2
47,584 + MPMX19_03810 0.16 -0.8
47,584 + MPMX19_03810 0.16 -1.7
47,584 + MPMX19_03810 0.16 -1.7
47,584 + MPMX19_03810 0.16 -1.2
47,584 + MPMX19_03810 0.16 -1.7
47,584 + MPMX19_03810 0.16 -0.6
47,584 + MPMX19_03810 0.16 -1.0
47,584 + MPMX19_03810 0.16 -0.8
47,584 + MPMX19_03810 0.16 -2.6
47,584 + MPMX19_03810 0.16 +0.6
47,584 + MPMX19_03810 0.16 -1.5
47,584 + MPMX19_03810 0.16 -1.4
47,584 + MPMX19_03810 0.16 -1.5
47,584 + MPMX19_03810 0.16 -0.3
47,584 + MPMX19_03810 0.16 -0.4
47,584 + MPMX19_03810 0.16 -1.7
47,584 + MPMX19_03810 0.16 +0.5
47,584 + MPMX19_03810 0.16 +1.3
47,584 + MPMX19_03810 0.16 +2.2
47,585 - MPMX19_03810 0.16 -0.2
47,585 - MPMX19_03810 0.16 -1.3
47,585 - MPMX19_03810 0.16 +0.4
47,585 - MPMX19_03810 0.16 -2.5
47,585 - MPMX19_03810 0.16 -1.0
47,585 - MPMX19_03810 0.16 -0.8
47,585 - MPMX19_03810 0.16 -0.5
47,585 - MPMX19_03810 0.16 -0.1
47,585 - MPMX19_03810 0.16 -0.3
47,585 - MPMX19_03810 0.16 -0.6
47,585 - MPMX19_03810 0.16 +0.5
47,585 - MPMX19_03810 0.16 +0.2
47,585 - MPMX19_03810 0.16 +1.0
47,585 - MPMX19_03810 0.16 -1.6
47,585 - MPMX19_03810 0.16 -0.3
47,585 - MPMX19_03810 0.16 +0.2
47,585 - MPMX19_03810 0.16 -0.7
47,603 + MPMX19_03810 0.20 -0.7
47,603 + MPMX19_03810 0.20 -1.0
47,603 + MPMX19_03810 0.20 -0.9
47,603 + MPMX19_03810 0.20 +0.2
47,603 + MPMX19_03810 0.20 -0.3
47,604 - MPMX19_03810 0.21 -0.3
47,604 - MPMX19_03810 0.21 +0.5
47,604 - MPMX19_03810 0.21 +0.7
47,604 - MPMX19_03810 0.21 -0.5
47,604 - MPMX19_03810 0.21 -1.2
47,604 - MPMX19_03810 0.21 +1.0
47,604 - MPMX19_03810 0.21 -3.0
47,692 + MPMX19_03810 0.43 -2.6
47,692 + MPMX19_03810 0.43 +0.6
47,692 + MPMX19_03810 0.43 -1.4
47,701 + MPMX19_03810 0.45 -0.8
47,701 + MPMX19_03810 0.45 -1.7
47,701 + MPMX19_03810 0.45 -0.5
47,701 + MPMX19_03810 0.45 +0.5
47,701 + MPMX19_03810 0.45 -0.6
47,701 + MPMX19_03810 0.45 -0.0
47,701 + MPMX19_03810 0.45 +1.3
47,701 + MPMX19_03810 0.45 -1.3
47,702 - MPMX19_03810 0.45 +0.0
47,702 - MPMX19_03810 0.45 -1.1
47,702 - MPMX19_03810 0.45 -0.5
47,702 - MPMX19_03810 0.45 -1.6
47,702 - MPMX19_03810 0.45 +0.8
47,702 - MPMX19_03810 0.45 +0.9
47,702 - MPMX19_03810 0.45 +0.9
47,702 - MPMX19_03810 0.45 -0.8
47,702 - MPMX19_03810 0.45 -0.5
47,702 - MPMX19_03810 0.45 -0.2
47,702 - MPMX19_03810 0.45 +1.0
47,702 - MPMX19_03810 0.45 +1.3
47,702 - MPMX19_03810 0.45 -1.8
47,851 + MPMX19_03810 0.83 -1.1
47,851 + MPMX19_03810 0.83 -1.3
47,851 + MPMX19_03810 0.83 -1.3
47,851 + MPMX19_03810 0.83 -0.8
47,852 - MPMX19_03810 0.83 -1.3
47,852 - MPMX19_03810 0.83 +0.3
47,852 - MPMX19_03810 0.83 -1.1
47,977 + +0.3
47,977 + -0.2
47,978 - +0.3
47,978 - +0.0
47,978 - -0.1
47,978 - -0.4
47,978 - -0.1
47,978 - -0.2
47,978 - -1.5
47,996 + +1.3
47,997 - -1.8
48,040 + MPMX19_03811 0.11 -0.4
48,305 + MPMX19_03811 0.35 -0.2
48,305 + MPMX19_03811 0.35 -1.1
48,305 + MPMX19_03811 0.35 -0.1
48,305 + MPMX19_03811 0.35 +1.6
48,305 + MPMX19_03811 0.35 -0.1
48,305 + MPMX19_03811 0.35 -1.5
48,305 + MPMX19_03811 0.35 -1.0
48,306 - MPMX19_03811 0.36 +0.3
48,306 - MPMX19_03811 0.36 -0.2
48,405 + MPMX19_03811 0.45 +1.3
48,615 + MPMX19_03811 0.64 +0.4
48,615 + MPMX19_03811 0.64 -0.5
48,731 + MPMX19_03811 0.74 -1.3
48,732 - MPMX19_03811 0.74 -0.5
48,732 - MPMX19_03811 0.74 +0.3
48,854 + MPMX19_03811 0.86 +0.1
48,855 - MPMX19_03811 0.86 +0.4
48,855 - MPMX19_03811 0.86 -1.0
48,855 - MPMX19_03811 0.86 +0.1
48,916 + -0.5
48,917 - +1.6
48,917 - -0.7

Or see this region's nucleotide sequence