Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03498

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03497 and MPMX19_03498 are separated by 4 nucleotidesMPMX19_03498 and MPMX19_03499 overlap by 4 nucleotidesMPMX19_03499 and MPMX19_03500 are separated by 16 nucleotides MPMX19_03497: MPMX19_03497 - Formate dehydrogenase-O major subunit, at 914,140 to 917,202 _03497 MPMX19_03498: MPMX19_03498 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 917,207 to 918,118 _03498 MPMX19_03499: MPMX19_03499 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 918,115 to 918,774 _03499 MPMX19_03500: MPMX19_03500 - Sulfur carrier protein FdhD, at 918,791 to 919,627 _03500 Position (kb) 917 918 919Strain fitness (log2 ratio) -3 -2 -1 0 1at 916.477 kb on + strand, within MPMX19_03497at 916.477 kb on + strand, within MPMX19_03497at 916.477 kb on + strand, within MPMX19_03497at 916.477 kb on + strand, within MPMX19_03497at 916.478 kb on - strand, within MPMX19_03497at 916.478 kb on - strand, within MPMX19_03497at 916.478 kb on - strand, within MPMX19_03497at 916.478 kb on - strand, within MPMX19_03497at 916.478 kb on - strand, within MPMX19_03497at 916.693 kb on + strand, within MPMX19_03497at 916.693 kb on + strand, within MPMX19_03497at 916.693 kb on + strand, within MPMX19_03497at 916.693 kb on + strand, within MPMX19_03497at 916.693 kb on + strand, within MPMX19_03497at 916.694 kb on - strand, within MPMX19_03497at 916.694 kb on - strand, within MPMX19_03497at 916.694 kb on - strand, within MPMX19_03497at 916.694 kb on - strand, within MPMX19_03497at 916.813 kb on + strand, within MPMX19_03497at 916.813 kb on + strand, within MPMX19_03497at 916.813 kb on + strand, within MPMX19_03497at 916.813 kb on + strand, within MPMX19_03497at 916.814 kb on - strand, within MPMX19_03497at 916.814 kb on - strand, within MPMX19_03497at 916.828 kb on + strand, within MPMX19_03497at 916.829 kb on - strand, within MPMX19_03497at 916.829 kb on - strand, within MPMX19_03497at 916.829 kb on - strand, within MPMX19_03497at 916.829 kb on - strand, within MPMX19_03497at 917.101 kb on + strandat 917.101 kb on + strandat 917.101 kb on + strandat 917.101 kb on + strandat 917.101 kb on + strandat 917.101 kb on + strandat 917.102 kb on - strandat 917.102 kb on - strandat 917.158 kb on + strandat 917.158 kb on + strandat 917.158 kb on + strandat 917.159 kb on - strandat 917.159 kb on - strandat 917.201 kb on - strandat 917.393 kb on + strand, within MPMX19_03498at 917.393 kb on + strand, within MPMX19_03498at 917.394 kb on - strand, within MPMX19_03498at 917.394 kb on - strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.558 kb on + strand, within MPMX19_03498at 917.580 kb on - strand, within MPMX19_03498at 917.590 kb on + strand, within MPMX19_03498at 917.590 kb on + strand, within MPMX19_03498at 917.591 kb on - strand, within MPMX19_03498at 917.609 kb on + strand, within MPMX19_03498at 917.610 kb on - strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.669 kb on + strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.670 kb on - strand, within MPMX19_03498at 917.837 kb on + strand, within MPMX19_03498at 917.837 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.873 kb on + strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.874 kb on - strand, within MPMX19_03498at 917.906 kb on + strand, within MPMX19_03498at 917.906 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.023 kb on + strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.024 kb on - strand, within MPMX19_03498at 918.178 kb on + strandat 918.179 kb on - strandat 918.259 kb on + strand, within MPMX19_03499at 918.260 kb on - strand, within MPMX19_03499at 918.260 kb on - strand, within MPMX19_03499at 918.469 kb on + strand, within MPMX19_03499at 918.469 kb on + strand, within MPMX19_03499at 918.470 kb on - strand, within MPMX19_03499at 918.655 kb on + strand, within MPMX19_03499at 918.708 kb on + strand, within MPMX19_03499at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.932 kb on + strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 918.933 kb on - strand, within MPMX19_03500at 919.084 kb on + strand, within MPMX19_03500at 919.084 kb on + strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500at 919.085 kb on - strand, within MPMX19_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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916,477 + MPMX19_03497 0.76 -2.1
916,477 + MPMX19_03497 0.76 -1.0
916,477 + MPMX19_03497 0.76 +0.1
916,477 + MPMX19_03497 0.76 -0.5
916,478 - MPMX19_03497 0.76 +0.0
916,478 - MPMX19_03497 0.76 -0.5
916,478 - MPMX19_03497 0.76 -0.0
916,478 - MPMX19_03497 0.76 -0.1
916,478 - MPMX19_03497 0.76 +0.5
916,693 + MPMX19_03497 0.83 -1.5
916,693 + MPMX19_03497 0.83 +0.8
916,693 + MPMX19_03497 0.83 -2.5
916,693 + MPMX19_03497 0.83 -0.1
916,693 + MPMX19_03497 0.83 -0.3
916,694 - MPMX19_03497 0.83 -0.0
916,694 - MPMX19_03497 0.83 -0.7
916,694 - MPMX19_03497 0.83 +0.9
916,694 - MPMX19_03497 0.83 +0.1
916,813 + MPMX19_03497 0.87 +0.3
916,813 + MPMX19_03497 0.87 +0.7
916,813 + MPMX19_03497 0.87 -1.5
916,813 + MPMX19_03497 0.87 -0.8
916,814 - MPMX19_03497 0.87 +0.5
916,814 - MPMX19_03497 0.87 -0.5
916,828 + MPMX19_03497 0.88 +0.1
916,829 - MPMX19_03497 0.88 +0.3
916,829 - MPMX19_03497 0.88 -1.8
916,829 - MPMX19_03497 0.88 -1.4
916,829 - MPMX19_03497 0.88 +0.0
917,101 + -0.9
917,101 + -0.3
917,101 + -0.3
917,101 + -0.5
917,101 + -1.7
917,101 + +1.2
917,102 - +0.9
917,102 - -1.0
917,158 + +0.3
917,158 + -1.8
917,158 + +0.4
917,159 - +0.2
917,159 - +1.1
917,201 - +0.2
917,393 + MPMX19_03498 0.20 -1.7
917,393 + MPMX19_03498 0.20 -0.3
917,394 - MPMX19_03498 0.21 +0.5
917,394 - MPMX19_03498 0.21 +0.6
917,558 + MPMX19_03498 0.38 -1.1
917,558 + MPMX19_03498 0.38 -0.5
917,558 + MPMX19_03498 0.38 -0.7
917,580 - MPMX19_03498 0.41 -1.5
917,590 + MPMX19_03498 0.42 -1.2
917,590 + MPMX19_03498 0.42 -2.8
917,591 - MPMX19_03498 0.42 -0.9
917,609 + MPMX19_03498 0.44 +1.0
917,610 - MPMX19_03498 0.44 +0.3
917,669 + MPMX19_03498 0.51 -0.9
917,669 + MPMX19_03498 0.51 -0.8
917,669 + MPMX19_03498 0.51 +0.3
917,669 + MPMX19_03498 0.51 +0.6
917,669 + MPMX19_03498 0.51 +1.6
917,669 + MPMX19_03498 0.51 -1.6
917,670 - MPMX19_03498 0.51 -0.4
917,670 - MPMX19_03498 0.51 +0.7
917,670 - MPMX19_03498 0.51 +0.4
917,670 - MPMX19_03498 0.51 +0.4
917,670 - MPMX19_03498 0.51 -1.2
917,670 - MPMX19_03498 0.51 -0.7
917,837 + MPMX19_03498 0.69 +0.3
917,837 + MPMX19_03498 0.69 -0.5
917,873 + MPMX19_03498 0.73 -1.5
917,873 + MPMX19_03498 0.73 +0.3
917,873 + MPMX19_03498 0.73 -1.5
917,873 + MPMX19_03498 0.73 +1.1
917,873 + MPMX19_03498 0.73 -0.9
917,873 + MPMX19_03498 0.73 -0.3
917,873 + MPMX19_03498 0.73 +0.3
917,873 + MPMX19_03498 0.73 +0.2
917,873 + MPMX19_03498 0.73 -1.1
917,873 + MPMX19_03498 0.73 +0.0
917,873 + MPMX19_03498 0.73 -0.0
917,873 + MPMX19_03498 0.73 +1.5
917,873 + MPMX19_03498 0.73 -0.5
917,873 + MPMX19_03498 0.73 -0.1
917,873 + MPMX19_03498 0.73 -0.3
917,873 + MPMX19_03498 0.73 -0.9
917,873 + MPMX19_03498 0.73 -1.1
917,873 + MPMX19_03498 0.73 +1.3
917,873 + MPMX19_03498 0.73 -0.3
917,873 + MPMX19_03498 0.73 -1.3
917,873 + MPMX19_03498 0.73 -1.0
917,873 + MPMX19_03498 0.73 -0.8
917,873 + MPMX19_03498 0.73 +0.6
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -0.4
917,873 + MPMX19_03498 0.73 -2.1
917,873 + MPMX19_03498 0.73 +1.1
917,873 + MPMX19_03498 0.73 -0.3
917,874 - MPMX19_03498 0.73 -0.0
917,874 - MPMX19_03498 0.73 -1.0
917,874 - MPMX19_03498 0.73 -0.1
917,874 - MPMX19_03498 0.73 +0.3
917,874 - MPMX19_03498 0.73 +1.0
917,874 - MPMX19_03498 0.73 +0.6
917,874 - MPMX19_03498 0.73 +1.3
917,874 - MPMX19_03498 0.73 +0.0
917,874 - MPMX19_03498 0.73 +0.9
917,874 - MPMX19_03498 0.73 -0.3
917,874 - MPMX19_03498 0.73 +0.9
917,874 - MPMX19_03498 0.73 +0.0
917,874 - MPMX19_03498 0.73 -0.1
917,874 - MPMX19_03498 0.73 -2.6
917,874 - MPMX19_03498 0.73 -0.7
917,874 - MPMX19_03498 0.73 -0.7
917,874 - MPMX19_03498 0.73 +0.0
917,874 - MPMX19_03498 0.73 +0.1
917,874 - MPMX19_03498 0.73 -0.5
917,874 - MPMX19_03498 0.73 -0.6
917,874 - MPMX19_03498 0.73 +0.1
917,906 + MPMX19_03498 0.77 -0.1
917,906 + MPMX19_03498 0.77 +0.2
918,023 + MPMX19_03498 0.89 +0.8
918,023 + MPMX19_03498 0.89 -1.5
918,023 + MPMX19_03498 0.89 -0.5
918,024 - MPMX19_03498 0.90 -1.1
918,024 - MPMX19_03498 0.90 +1.2
918,024 - MPMX19_03498 0.90 +0.2
918,024 - MPMX19_03498 0.90 -0.4
918,024 - MPMX19_03498 0.90 +0.1
918,024 - MPMX19_03498 0.90 +1.2
918,024 - MPMX19_03498 0.90 +0.3
918,024 - MPMX19_03498 0.90 +0.1
918,178 + +0.7
918,179 - +0.2
918,259 + MPMX19_03499 0.22 -1.6
918,260 - MPMX19_03499 0.22 +0.7
918,260 - MPMX19_03499 0.22 +0.5
918,469 + MPMX19_03499 0.54 +0.3
918,469 + MPMX19_03499 0.54 -0.8
918,470 - MPMX19_03499 0.54 -1.5
918,655 + MPMX19_03499 0.82 -0.5
918,708 + MPMX19_03499 0.90 -0.3
918,932 + MPMX19_03500 0.17 +0.3
918,932 + MPMX19_03500 0.17 -0.5
918,932 + MPMX19_03500 0.17 -0.5
918,932 + MPMX19_03500 0.17 +0.5
918,932 + MPMX19_03500 0.17 +0.1
918,932 + MPMX19_03500 0.17 +0.2
918,933 - MPMX19_03500 0.17 +0.5
918,933 - MPMX19_03500 0.17 -0.6
918,933 - MPMX19_03500 0.17 -0.3
918,933 - MPMX19_03500 0.17 -0.2
918,933 - MPMX19_03500 0.17 -1.0
919,084 + MPMX19_03500 0.35 -0.7
919,084 + MPMX19_03500 0.35 -1.3
919,085 - MPMX19_03500 0.35 -2.1
919,085 - MPMX19_03500 0.35 +0.8
919,085 - MPMX19_03500 0.35 -0.6

Or see this region's nucleotide sequence