Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03128

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03127 and MPMX19_03128 are separated by 59 nucleotidesMPMX19_03128 and MPMX19_03129 are separated by 357 nucleotides MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404 _03127 MPMX19_03128: MPMX19_03128 - hypothetical protein, at 415,464 to 416,042 _03128 MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761 _03129 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1at 414.979 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.234 kb on + strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.235 kb on - strand, within MPMX19_03127at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 416.013 kb on - strandat 416.122 kb on + strandat 416.123 kb on - strandat 416.149 kb on + strandat 416.150 kb on - strandat 416.194 kb on + strandat 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 417.030 kb on + strand, within MPMX19_03129at 417.030 kb on + strand, within MPMX19_03129

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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414,979 + MPMX19_03127 0.56 -1.2
415,234 + MPMX19_03127 0.82 +0.4
415,234 + MPMX19_03127 0.82 +0.5
415,234 + MPMX19_03127 0.82 +0.9
415,235 - MPMX19_03127 0.83 -0.6
415,235 - MPMX19_03127 0.83 +0.3
415,235 - MPMX19_03127 0.83 -2.0
415,235 - MPMX19_03127 0.83 -2.1
415,533 + MPMX19_03128 0.12 -0.6
415,533 + MPMX19_03128 0.12 -0.6
415,533 + MPMX19_03128 0.12 -0.3
415,533 + MPMX19_03128 0.12 +0.7
415,533 + MPMX19_03128 0.12 -1.1
415,533 + MPMX19_03128 0.12 -0.9
415,533 + MPMX19_03128 0.12 -0.2
415,533 + MPMX19_03128 0.12 -1.8
415,533 + MPMX19_03128 0.12 -2.5
415,533 + MPMX19_03128 0.12 -0.4
415,534 - MPMX19_03128 0.12 -1.6
415,534 - MPMX19_03128 0.12 -0.7
415,534 - MPMX19_03128 0.12 -1.1
416,013 - -0.8
416,122 + -0.9
416,123 - +0.5
416,149 + -0.7
416,150 - -0.9
416,194 + +0.4
416,724 + MPMX19_03129 0.24 -0.0
416,724 + MPMX19_03129 0.24 -2.6
416,724 + MPMX19_03129 0.24 +0.8
416,724 + MPMX19_03129 0.24 +1.4
416,724 + MPMX19_03129 0.24 -0.6
416,724 + MPMX19_03129 0.24 +0.5
416,724 + MPMX19_03129 0.24 +0.3
416,724 + MPMX19_03129 0.24 +0.2
416,725 - MPMX19_03129 0.24 -1.2
416,725 - MPMX19_03129 0.24 +0.4
416,725 - MPMX19_03129 0.24 -0.8
416,725 - MPMX19_03129 0.24 +1.4
416,725 - MPMX19_03129 0.24 +0.4
416,725 - MPMX19_03129 0.24 -0.7
416,725 - MPMX19_03129 0.24 +0.9
416,725 - MPMX19_03129 0.24 -1.7
416,725 - MPMX19_03129 0.24 -2.4
416,725 - MPMX19_03129 0.24 -1.8
416,725 - MPMX19_03129 0.24 +0.8
416,727 + MPMX19_03129 0.24 -0.9
416,727 + MPMX19_03129 0.24 -0.4
416,727 + MPMX19_03129 0.24 +0.4
416,728 - MPMX19_03129 0.24 +0.1
416,728 - MPMX19_03129 0.24 -0.7
416,728 - MPMX19_03129 0.24 +0.8
416,793 + MPMX19_03129 0.29 -1.8
416,793 + MPMX19_03129 0.29 -1.6
416,793 + MPMX19_03129 0.29 -0.6
417,030 + MPMX19_03129 0.46 +0.4
417,030 + MPMX19_03129 0.46 -1.4

Or see this region's nucleotide sequence