Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03028 and MPMX19_03029 are separated by 258 nucleotides MPMX19_03029 and MPMX19_03030 overlap by 4 nucleotides
MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760
_03028
MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341
_03029
MPMX19_03030: MPMX19_03030 - Xylulose kinase, at 296,338 to 297,789
_03030
Position (kb)
295
296
297 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.408 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.977 kb on + strand at 294.977 kb on + strand at 294.978 kb on - strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.027 kb on - strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.051 kb on - strand at 295.174 kb on - strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.581 kb on + strand, within MPMX19_03029 at 295.582 kb on - strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 296.193 kb on + strand, within MPMX19_03029 at 296.194 kb on - strand, within MPMX19_03029 at 296.194 kb on - strand, within MPMX19_03029 at 296.256 kb on + strand at 296.257 kb on - strand at 296.257 kb on - strand at 296.265 kb on + strand at 296.266 kb on - strand at 296.266 kb on - strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.367 kb on - strand at 296.367 kb on - strand at 296.367 kb on - strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.400 kb on - strand at 296.400 kb on - strand at 296.400 kb on - strand at 296.789 kb on + strand, within MPMX19_03030 at 296.789 kb on + strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 294,183 + MPMX19_03028 0.45 -0.9 294,183 + MPMX19_03028 0.45 -0.2 294,183 + MPMX19_03028 0.45 -1.5 294,184 - MPMX19_03028 0.46 -1.4 294,184 - MPMX19_03028 0.46 +0.1 294,184 - MPMX19_03028 0.46 +0.6 294,184 - MPMX19_03028 0.46 -0.6 294,300 + MPMX19_03028 0.56 -0.7 294,300 + MPMX19_03028 0.56 +1.2 294,300 + MPMX19_03028 0.56 +1.2 294,300 + MPMX19_03028 0.56 +0.5 294,300 + MPMX19_03028 0.56 +1.7 294,300 + MPMX19_03028 0.56 -0.2 294,300 + MPMX19_03028 0.56 +0.3 294,301 - MPMX19_03028 0.57 +0.2 294,301 - MPMX19_03028 0.57 -0.0 294,301 - MPMX19_03028 0.57 -0.3 294,301 - MPMX19_03028 0.57 +0.6 294,301 - MPMX19_03028 0.57 +1.6 294,301 - MPMX19_03028 0.57 -1.3 294,301 - MPMX19_03028 0.57 +0.6 294,301 - MPMX19_03028 0.57 -0.4 294,301 - MPMX19_03028 0.57 -0.5 294,301 - MPMX19_03028 0.57 +0.9 294,375 + MPMX19_03028 0.64 -0.7 294,375 + MPMX19_03028 0.64 +0.1 294,375 + MPMX19_03028 0.64 -2.5 294,375 + MPMX19_03028 0.64 +0.1 294,375 + MPMX19_03028 0.64 -1.2 294,375 + MPMX19_03028 0.64 -1.5 294,375 + MPMX19_03028 0.64 -0.2 294,376 - MPMX19_03028 0.64 -1.6 294,376 - MPMX19_03028 0.64 -0.5 294,376 - MPMX19_03028 0.64 +0.6 294,376 - MPMX19_03028 0.64 -0.4 294,376 - MPMX19_03028 0.64 +0.6 294,376 - MPMX19_03028 0.64 +0.5 294,376 - MPMX19_03028 0.64 +0.6 294,376 - MPMX19_03028 0.64 -0.3 294,376 - MPMX19_03028 0.64 -2.7 294,376 - MPMX19_03028 0.64 -0.7 294,408 + MPMX19_03028 0.67 -2.3 294,570 + MPMX19_03028 0.82 -1.2 294,570 + MPMX19_03028 0.82 -0.0 294,570 + MPMX19_03028 0.82 -0.6 294,570 + MPMX19_03028 0.82 -0.2 294,570 + MPMX19_03028 0.82 +0.4 294,570 + MPMX19_03028 0.82 -0.5 294,570 + MPMX19_03028 0.82 +0.2 294,570 + MPMX19_03028 0.82 +0.0 294,570 + MPMX19_03028 0.82 -0.2 294,570 + MPMX19_03028 0.82 +0.1 294,570 + MPMX19_03028 0.82 -0.6 294,570 + MPMX19_03028 0.82 +0.3 294,570 + MPMX19_03028 0.82 -1.6 294,570 + MPMX19_03028 0.82 +0.3 294,570 + MPMX19_03028 0.82 -0.3 294,570 + MPMX19_03028 0.82 -0.9 294,571 - MPMX19_03028 0.82 -1.4 294,571 - MPMX19_03028 0.82 -0.6 294,571 - MPMX19_03028 0.82 -0.2 294,571 - MPMX19_03028 0.82 +1.7 294,571 - MPMX19_03028 0.82 -2.5 294,571 - MPMX19_03028 0.82 -2.0 294,571 - MPMX19_03028 0.82 +0.4 294,571 - MPMX19_03028 0.82 -1.3 294,571 - MPMX19_03028 0.82 +0.1 294,697 + -0.8 294,697 + -2.7 294,697 + +0.0 294,697 + +0.6 294,698 - -0.9 294,698 - +0.4 294,698 - +1.0 294,698 - -0.3 294,698 - -0.2 294,698 - -0.9 294,774 + -1.6 294,774 + -1.8 294,774 + +0.3 294,774 + +0.4 294,774 + +0.6 294,775 - -2.7 294,775 - -0.6 294,775 - +1.0 294,775 - -1.2 294,775 - -0.9 294,775 - +0.9 294,775 - -0.0 294,775 - -0.5 294,775 - +1.2 294,775 - -1.1 294,775 - -1.6 294,775 - -0.4 294,775 - -1.2 294,775 - -1.4 294,977 + -1.2 294,977 + -0.6 294,978 - -1.6 295,005 + -0.4 295,005 + +0.7 295,005 + -0.9 295,005 + +0.6 295,027 - +0.2 295,050 + -0.2 295,050 + -0.6 295,050 + -1.8 295,050 + +0.9 295,051 - -1.2 295,174 - MPMX19_03029 0.12 +0.4 295,563 + MPMX19_03029 0.41 -0.5 295,563 + MPMX19_03029 0.41 +0.3 295,564 - MPMX19_03029 0.41 -0.3 295,564 - MPMX19_03029 0.41 -0.0 295,564 - MPMX19_03029 0.41 -0.9 295,581 + MPMX19_03029 0.42 -1.8 295,582 - MPMX19_03029 0.43 +1.1 295,605 + MPMX19_03029 0.44 -1.8 295,605 + MPMX19_03029 0.44 -0.9 295,605 + MPMX19_03029 0.44 +0.4 295,605 + MPMX19_03029 0.44 -0.6 295,606 - MPMX19_03029 0.44 -0.9 295,606 - MPMX19_03029 0.44 -0.9 295,752 + MPMX19_03029 0.55 +0.1 295,752 + MPMX19_03029 0.55 -0.0 295,752 + MPMX19_03029 0.55 +0.3 295,752 + MPMX19_03029 0.55 -0.2 295,753 - MPMX19_03029 0.55 -0.6 295,753 - MPMX19_03029 0.55 +0.3 295,753 - MPMX19_03029 0.55 -0.2 295,779 + MPMX19_03029 0.57 -2.1 295,779 + MPMX19_03029 0.57 -0.0 295,779 + MPMX19_03029 0.57 +0.7 295,779 + MPMX19_03029 0.57 -0.6 295,779 + MPMX19_03029 0.57 +0.4 295,779 + MPMX19_03029 0.57 +0.4 295,779 + MPMX19_03029 0.57 +0.6 295,779 + MPMX19_03029 0.57 -0.3 295,779 + MPMX19_03029 0.57 +0.1 295,779 + MPMX19_03029 0.57 -0.8 295,779 + MPMX19_03029 0.57 -1.2 295,779 + MPMX19_03029 0.57 -0.1 295,780 - MPMX19_03029 0.58 -0.3 295,780 - MPMX19_03029 0.58 -0.3 295,780 - MPMX19_03029 0.58 -2.8 295,780 - MPMX19_03029 0.58 -1.2 295,780 - MPMX19_03029 0.58 -1.7 295,780 - MPMX19_03029 0.58 -1.5 295,780 - MPMX19_03029 0.58 -2.2 295,780 - MPMX19_03029 0.58 +0.2 295,780 - MPMX19_03029 0.58 +0.8 295,780 - MPMX19_03029 0.58 -1.4 295,780 - MPMX19_03029 0.58 -1.9 295,780 - MPMX19_03029 0.58 -0.1 295,839 + MPMX19_03029 0.62 -0.2 295,839 + MPMX19_03029 0.62 -0.6 295,839 + MPMX19_03029 0.62 -0.6 295,839 + MPMX19_03029 0.62 +0.5 295,839 + MPMX19_03029 0.62 +0.2 295,840 - MPMX19_03029 0.62 -1.6 295,840 - MPMX19_03029 0.62 -0.3 295,840 - MPMX19_03029 0.62 -1.6 295,840 - MPMX19_03029 0.62 -2.6 295,884 + MPMX19_03029 0.65 +0.4 295,884 + MPMX19_03029 0.65 -1.2 295,884 + MPMX19_03029 0.65 -0.2 295,884 + MPMX19_03029 0.65 +0.1 295,885 - MPMX19_03029 0.65 -1.6 295,885 - MPMX19_03029 0.65 -1.0 295,885 - MPMX19_03029 0.65 +0.8 295,885 - MPMX19_03029 0.65 -0.4 295,885 - MPMX19_03029 0.65 +0.2 296,193 + MPMX19_03029 0.89 -0.6 296,194 - MPMX19_03029 0.89 -0.9 296,194 - MPMX19_03029 0.89 +1.2 296,256 + -0.6 296,257 - +1.0 296,257 - +0.7 296,265 + -0.5 296,266 - -0.4 296,266 - -0.5 296,366 + +0.7 296,366 + -0.5 296,366 + +1.2 296,366 + -0.3 296,366 + +0.2 296,366 + -0.6 296,367 - -1.6 296,367 - -0.4 296,367 - -0.0 296,399 + +1.1 296,399 + -0.2 296,399 + -1.2 296,399 + -0.9 296,399 + +0.0 296,400 - +1.7 296,400 - -1.1 296,400 - +0.4 296,789 + MPMX19_03030 0.31 -2.4 296,789 + MPMX19_03030 0.31 -0.8 296,790 - MPMX19_03030 0.31 -1.3 296,790 - MPMX19_03030 0.31 -1.1 296,790 - MPMX19_03030 0.31 -1.4 296,790 - MPMX19_03030 0.31 +1.1 296,790 - MPMX19_03030 0.31 -0.2 296,790 - MPMX19_03030 0.31 -1.1 297,320 + MPMX19_03030 0.68 -2.5 297,320 + MPMX19_03030 0.68 +0.3 297,320 + MPMX19_03030 0.68 +0.9 297,320 + MPMX19_03030 0.68 -2.1 297,320 + MPMX19_03030 0.68 +1.0 297,320 + MPMX19_03030 0.68 -0.5 297,320 + MPMX19_03030 0.68 +1.0 297,320 + MPMX19_03030 0.68 +0.4 297,320 + MPMX19_03030 0.68 +0.6 297,321 - MPMX19_03030 0.68 -0.5 297,321 - MPMX19_03030 0.68 -0.6 297,321 - MPMX19_03030 0.68 -0.1 297,321 - MPMX19_03030 0.68 -0.3 297,321 - MPMX19_03030 0.68 -0.5 297,321 - MPMX19_03030 0.68 -1.3 297,321 - MPMX19_03030 0.68 -0.3 297,321 - MPMX19_03030 0.68 +0.2
Or see this region's nucleotide sequence