Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03029

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03028 and MPMX19_03029 are separated by 258 nucleotidesMPMX19_03029 and MPMX19_03030 overlap by 4 nucleotides MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760 _03028 MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341 _03029 MPMX19_03030: MPMX19_03030 - Xylulose kinase, at 296,338 to 297,789 _03030 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.183 kb on + strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.184 kb on - strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.300 kb on + strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.301 kb on - strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.375 kb on + strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.376 kb on - strand, within MPMX19_03028at 294.408 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.570 kb on + strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.571 kb on - strand, within MPMX19_03028at 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.697 kb on + strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.698 kb on - strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.774 kb on + strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.775 kb on - strandat 294.977 kb on + strandat 294.977 kb on + strandat 294.978 kb on - strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.005 kb on + strandat 295.027 kb on - strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.050 kb on + strandat 295.051 kb on - strandat 295.174 kb on - strand, within MPMX19_03029at 295.563 kb on + strand, within MPMX19_03029at 295.563 kb on + strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.564 kb on - strand, within MPMX19_03029at 295.581 kb on + strand, within MPMX19_03029at 295.582 kb on - strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.605 kb on + strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.606 kb on - strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.752 kb on + strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.753 kb on - strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.779 kb on + strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.780 kb on - strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.839 kb on + strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.840 kb on - strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.884 kb on + strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 295.885 kb on - strand, within MPMX19_03029at 296.193 kb on + strand, within MPMX19_03029at 296.194 kb on - strand, within MPMX19_03029at 296.194 kb on - strand, within MPMX19_03029at 296.256 kb on + strandat 296.257 kb on - strandat 296.257 kb on - strandat 296.265 kb on + strandat 296.266 kb on - strandat 296.266 kb on - strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.366 kb on + strandat 296.367 kb on - strandat 296.367 kb on - strandat 296.367 kb on - strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.399 kb on + strandat 296.400 kb on - strandat 296.400 kb on - strandat 296.400 kb on - strandat 296.789 kb on + strand, within MPMX19_03030at 296.789 kb on + strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 296.790 kb on - strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.320 kb on + strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030at 297.321 kb on - strand, within MPMX19_03030

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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294,183 + MPMX19_03028 0.45 -0.9
294,183 + MPMX19_03028 0.45 -0.2
294,183 + MPMX19_03028 0.45 -1.5
294,184 - MPMX19_03028 0.46 -1.4
294,184 - MPMX19_03028 0.46 +0.1
294,184 - MPMX19_03028 0.46 +0.6
294,184 - MPMX19_03028 0.46 -0.6
294,300 + MPMX19_03028 0.56 -0.7
294,300 + MPMX19_03028 0.56 +1.2
294,300 + MPMX19_03028 0.56 +1.2
294,300 + MPMX19_03028 0.56 +0.5
294,300 + MPMX19_03028 0.56 +1.7
294,300 + MPMX19_03028 0.56 -0.2
294,300 + MPMX19_03028 0.56 +0.3
294,301 - MPMX19_03028 0.57 +0.2
294,301 - MPMX19_03028 0.57 -0.0
294,301 - MPMX19_03028 0.57 -0.3
294,301 - MPMX19_03028 0.57 +0.6
294,301 - MPMX19_03028 0.57 +1.6
294,301 - MPMX19_03028 0.57 -1.3
294,301 - MPMX19_03028 0.57 +0.6
294,301 - MPMX19_03028 0.57 -0.4
294,301 - MPMX19_03028 0.57 -0.5
294,301 - MPMX19_03028 0.57 +0.9
294,375 + MPMX19_03028 0.64 -0.7
294,375 + MPMX19_03028 0.64 +0.1
294,375 + MPMX19_03028 0.64 -2.5
294,375 + MPMX19_03028 0.64 +0.1
294,375 + MPMX19_03028 0.64 -1.2
294,375 + MPMX19_03028 0.64 -1.5
294,375 + MPMX19_03028 0.64 -0.2
294,376 - MPMX19_03028 0.64 -1.6
294,376 - MPMX19_03028 0.64 -0.5
294,376 - MPMX19_03028 0.64 +0.6
294,376 - MPMX19_03028 0.64 -0.4
294,376 - MPMX19_03028 0.64 +0.6
294,376 - MPMX19_03028 0.64 +0.5
294,376 - MPMX19_03028 0.64 +0.6
294,376 - MPMX19_03028 0.64 -0.3
294,376 - MPMX19_03028 0.64 -2.7
294,376 - MPMX19_03028 0.64 -0.7
294,408 + MPMX19_03028 0.67 -2.3
294,570 + MPMX19_03028 0.82 -1.2
294,570 + MPMX19_03028 0.82 -0.0
294,570 + MPMX19_03028 0.82 -0.6
294,570 + MPMX19_03028 0.82 -0.2
294,570 + MPMX19_03028 0.82 +0.4
294,570 + MPMX19_03028 0.82 -0.5
294,570 + MPMX19_03028 0.82 +0.2
294,570 + MPMX19_03028 0.82 +0.0
294,570 + MPMX19_03028 0.82 -0.2
294,570 + MPMX19_03028 0.82 +0.1
294,570 + MPMX19_03028 0.82 -0.6
294,570 + MPMX19_03028 0.82 +0.3
294,570 + MPMX19_03028 0.82 -1.6
294,570 + MPMX19_03028 0.82 +0.3
294,570 + MPMX19_03028 0.82 -0.3
294,570 + MPMX19_03028 0.82 -0.9
294,571 - MPMX19_03028 0.82 -1.4
294,571 - MPMX19_03028 0.82 -0.6
294,571 - MPMX19_03028 0.82 -0.2
294,571 - MPMX19_03028 0.82 +1.7
294,571 - MPMX19_03028 0.82 -2.5
294,571 - MPMX19_03028 0.82 -2.0
294,571 - MPMX19_03028 0.82 +0.4
294,571 - MPMX19_03028 0.82 -1.3
294,571 - MPMX19_03028 0.82 +0.1
294,697 + -0.8
294,697 + -2.7
294,697 + +0.0
294,697 + +0.6
294,698 - -0.9
294,698 - +0.4
294,698 - +1.0
294,698 - -0.3
294,698 - -0.2
294,698 - -0.9
294,774 + -1.6
294,774 + -1.8
294,774 + +0.3
294,774 + +0.4
294,774 + +0.6
294,775 - -2.7
294,775 - -0.6
294,775 - +1.0
294,775 - -1.2
294,775 - -0.9
294,775 - +0.9
294,775 - -0.0
294,775 - -0.5
294,775 - +1.2
294,775 - -1.1
294,775 - -1.6
294,775 - -0.4
294,775 - -1.2
294,775 - -1.4
294,977 + -1.2
294,977 + -0.6
294,978 - -1.6
295,005 + -0.4
295,005 + +0.7
295,005 + -0.9
295,005 + +0.6
295,027 - +0.2
295,050 + -0.2
295,050 + -0.6
295,050 + -1.8
295,050 + +0.9
295,051 - -1.2
295,174 - MPMX19_03029 0.12 +0.4
295,563 + MPMX19_03029 0.41 -0.5
295,563 + MPMX19_03029 0.41 +0.3
295,564 - MPMX19_03029 0.41 -0.3
295,564 - MPMX19_03029 0.41 -0.0
295,564 - MPMX19_03029 0.41 -0.9
295,581 + MPMX19_03029 0.42 -1.8
295,582 - MPMX19_03029 0.43 +1.1
295,605 + MPMX19_03029 0.44 -1.8
295,605 + MPMX19_03029 0.44 -0.9
295,605 + MPMX19_03029 0.44 +0.4
295,605 + MPMX19_03029 0.44 -0.6
295,606 - MPMX19_03029 0.44 -0.9
295,606 - MPMX19_03029 0.44 -0.9
295,752 + MPMX19_03029 0.55 +0.1
295,752 + MPMX19_03029 0.55 -0.0
295,752 + MPMX19_03029 0.55 +0.3
295,752 + MPMX19_03029 0.55 -0.2
295,753 - MPMX19_03029 0.55 -0.6
295,753 - MPMX19_03029 0.55 +0.3
295,753 - MPMX19_03029 0.55 -0.2
295,779 + MPMX19_03029 0.57 -2.1
295,779 + MPMX19_03029 0.57 -0.0
295,779 + MPMX19_03029 0.57 +0.7
295,779 + MPMX19_03029 0.57 -0.6
295,779 + MPMX19_03029 0.57 +0.4
295,779 + MPMX19_03029 0.57 +0.4
295,779 + MPMX19_03029 0.57 +0.6
295,779 + MPMX19_03029 0.57 -0.3
295,779 + MPMX19_03029 0.57 +0.1
295,779 + MPMX19_03029 0.57 -0.8
295,779 + MPMX19_03029 0.57 -1.2
295,779 + MPMX19_03029 0.57 -0.1
295,780 - MPMX19_03029 0.58 -0.3
295,780 - MPMX19_03029 0.58 -0.3
295,780 - MPMX19_03029 0.58 -2.8
295,780 - MPMX19_03029 0.58 -1.2
295,780 - MPMX19_03029 0.58 -1.7
295,780 - MPMX19_03029 0.58 -1.5
295,780 - MPMX19_03029 0.58 -2.2
295,780 - MPMX19_03029 0.58 +0.2
295,780 - MPMX19_03029 0.58 +0.8
295,780 - MPMX19_03029 0.58 -1.4
295,780 - MPMX19_03029 0.58 -1.9
295,780 - MPMX19_03029 0.58 -0.1
295,839 + MPMX19_03029 0.62 -0.2
295,839 + MPMX19_03029 0.62 -0.6
295,839 + MPMX19_03029 0.62 -0.6
295,839 + MPMX19_03029 0.62 +0.5
295,839 + MPMX19_03029 0.62 +0.2
295,840 - MPMX19_03029 0.62 -1.6
295,840 - MPMX19_03029 0.62 -0.3
295,840 - MPMX19_03029 0.62 -1.6
295,840 - MPMX19_03029 0.62 -2.6
295,884 + MPMX19_03029 0.65 +0.4
295,884 + MPMX19_03029 0.65 -1.2
295,884 + MPMX19_03029 0.65 -0.2
295,884 + MPMX19_03029 0.65 +0.1
295,885 - MPMX19_03029 0.65 -1.6
295,885 - MPMX19_03029 0.65 -1.0
295,885 - MPMX19_03029 0.65 +0.8
295,885 - MPMX19_03029 0.65 -0.4
295,885 - MPMX19_03029 0.65 +0.2
296,193 + MPMX19_03029 0.89 -0.6
296,194 - MPMX19_03029 0.89 -0.9
296,194 - MPMX19_03029 0.89 +1.2
296,256 + -0.6
296,257 - +1.0
296,257 - +0.7
296,265 + -0.5
296,266 - -0.4
296,266 - -0.5
296,366 + +0.7
296,366 + -0.5
296,366 + +1.2
296,366 + -0.3
296,366 + +0.2
296,366 + -0.6
296,367 - -1.6
296,367 - -0.4
296,367 - -0.0
296,399 + +1.1
296,399 + -0.2
296,399 + -1.2
296,399 + -0.9
296,399 + +0.0
296,400 - +1.7
296,400 - -1.1
296,400 - +0.4
296,789 + MPMX19_03030 0.31 -2.4
296,789 + MPMX19_03030 0.31 -0.8
296,790 - MPMX19_03030 0.31 -1.3
296,790 - MPMX19_03030 0.31 -1.1
296,790 - MPMX19_03030 0.31 -1.4
296,790 - MPMX19_03030 0.31 +1.1
296,790 - MPMX19_03030 0.31 -0.2
296,790 - MPMX19_03030 0.31 -1.1
297,320 + MPMX19_03030 0.68 -2.5
297,320 + MPMX19_03030 0.68 +0.3
297,320 + MPMX19_03030 0.68 +0.9
297,320 + MPMX19_03030 0.68 -2.1
297,320 + MPMX19_03030 0.68 +1.0
297,320 + MPMX19_03030 0.68 -0.5
297,320 + MPMX19_03030 0.68 +1.0
297,320 + MPMX19_03030 0.68 +0.4
297,320 + MPMX19_03030 0.68 +0.6
297,321 - MPMX19_03030 0.68 -0.5
297,321 - MPMX19_03030 0.68 -0.6
297,321 - MPMX19_03030 0.68 -0.1
297,321 - MPMX19_03030 0.68 -0.3
297,321 - MPMX19_03030 0.68 -0.5
297,321 - MPMX19_03030 0.68 -1.3
297,321 - MPMX19_03030 0.68 -0.3
297,321 - MPMX19_03030 0.68 +0.2

Or see this region's nucleotide sequence