Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01467

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01465 and MPMX19_01466 are separated by 11 nucleotidesMPMX19_01466 and MPMX19_01467 overlap by 4 nucleotidesMPMX19_01467 and MPMX19_01468 are separated by 51 nucleotides MPMX19_01465: MPMX19_01465 - D-alanyl-D-alanine carboxypeptidase DacC, at 1,537,486 to 1,538,688 _01465 MPMX19_01466: MPMX19_01466 - Thymidylate kinase, at 1,538,700 to 1,539,359 _01466 MPMX19_01467: MPMX19_01467 - hypothetical protein, at 1,539,356 to 1,540,486 _01467 MPMX19_01468: MPMX19_01468 - Methionine--tRNA ligase, at 1,540,538 to 1,542,088 _01468 Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -1 0 1at 1540.484 kb on + strandat 1540.484 kb on + strandat 1540.490 kb on + strandat 1540.490 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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1,540,484 + -1.5
1,540,484 + -0.5
1,540,490 + -0.1
1,540,490 + -1.7

Or see this region's nucleotide sequence