Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00139

Experiment: NL-CCM; spin-x control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00138 and MPMX19_00139 are separated by 193 nucleotidesMPMX19_00139 and MPMX19_00140 are separated by 10 nucleotidesMPMX19_00140 and MPMX19_00141 are separated by 103 nucleotides MPMX19_00138: MPMX19_00138 - hypothetical protein, at 152,146 to 153,456 _00138 MPMX19_00139: MPMX19_00139 - hypothetical protein, at 153,650 to 153,925 _00139 MPMX19_00140: MPMX19_00140 - hypothetical protein, at 153,936 to 154,703 _00140 MPMX19_00141: MPMX19_00141 - hypothetical protein, at 154,807 to 155,061 _00141 Position (kb) 153 154Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 152.660 kb on + strand, within MPMX19_00138at 152.667 kb on + strand, within MPMX19_00138at 152.667 kb on + strand, within MPMX19_00138at 152.667 kb on + strand, within MPMX19_00138at 152.668 kb on - strand, within MPMX19_00138at 152.818 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.935 kb on - strand, within MPMX19_00138at 152.936 kb on + strand, within MPMX19_00138at 152.936 kb on + strand, within MPMX19_00138at 152.937 kb on - strand, within MPMX19_00138at 152.949 kb on + strand, within MPMX19_00138at 153.046 kb on + strand, within MPMX19_00138at 153.046 kb on + strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.047 kb on - strand, within MPMX19_00138at 153.156 kb on + strand, within MPMX19_00138at 153.445 kb on + strandat 153.537 kb on + strandat 153.553 kb on + strandat 153.689 kb on + strand, within MPMX19_00139at 153.689 kb on + strand, within MPMX19_00139at 153.689 kb on + strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.690 kb on - strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.809 kb on + strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 153.810 kb on - strand, within MPMX19_00139at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.410 kb on + strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.411 kb on - strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.584 kb on + strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.585 kb on - strand, within MPMX19_00140at 154.882 kb on + strand, within MPMX19_00141at 154.882 kb on + strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141at 154.883 kb on - strand, within MPMX19_00141

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; spin-x control
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152,660 + MPMX19_00138 0.39 -3.8
152,667 + MPMX19_00138 0.40 -0.1
152,667 + MPMX19_00138 0.40 -0.2
152,667 + MPMX19_00138 0.40 +0.6
152,668 - MPMX19_00138 0.40 -1.9
152,818 - MPMX19_00138 0.51 -1.4
152,935 - MPMX19_00138 0.60 +0.6
152,935 - MPMX19_00138 0.60 +0.7
152,935 - MPMX19_00138 0.60 -0.6
152,935 - MPMX19_00138 0.60 -1.1
152,935 - MPMX19_00138 0.60 -1.0
152,935 - MPMX19_00138 0.60 -2.5
152,935 - MPMX19_00138 0.60 -0.2
152,936 + MPMX19_00138 0.60 -0.8
152,936 + MPMX19_00138 0.60 -0.1
152,937 - MPMX19_00138 0.60 -1.1
152,949 + MPMX19_00138 0.61 -0.2
153,046 + MPMX19_00138 0.69 -0.3
153,046 + MPMX19_00138 0.69 -0.7
153,047 - MPMX19_00138 0.69 -0.8
153,047 - MPMX19_00138 0.69 -1.7
153,047 - MPMX19_00138 0.69 +0.6
153,047 - MPMX19_00138 0.69 -1.4
153,156 + MPMX19_00138 0.77 -0.5
153,445 + +0.3
153,537 + -1.7
153,553 + -2.3
153,689 + MPMX19_00139 0.14 +0.2
153,689 + MPMX19_00139 0.14 -1.4
153,689 + MPMX19_00139 0.14 -0.8
153,690 - MPMX19_00139 0.14 +0.1
153,690 - MPMX19_00139 0.14 +0.5
153,690 - MPMX19_00139 0.14 -2.8
153,809 + MPMX19_00139 0.58 +0.1
153,809 + MPMX19_00139 0.58 -2.5
153,809 + MPMX19_00139 0.58 -1.7
153,810 - MPMX19_00139 0.58 -0.3
153,810 - MPMX19_00139 0.58 -1.8
153,810 - MPMX19_00139 0.58 -1.8
153,810 - MPMX19_00139 0.58 -0.1
153,810 - MPMX19_00139 0.58 +1.5
154,410 + MPMX19_00140 0.62 -1.5
154,410 + MPMX19_00140 0.62 -1.1
154,410 + MPMX19_00140 0.62 -0.7
154,410 + MPMX19_00140 0.62 -1.0
154,410 + MPMX19_00140 0.62 +0.9
154,410 + MPMX19_00140 0.62 -2.4
154,410 + MPMX19_00140 0.62 +0.3
154,410 + MPMX19_00140 0.62 -1.8
154,410 + MPMX19_00140 0.62 -0.5
154,410 + MPMX19_00140 0.62 +0.2
154,410 + MPMX19_00140 0.62 +0.3
154,410 + MPMX19_00140 0.62 -0.1
154,410 + MPMX19_00140 0.62 -0.7
154,410 + MPMX19_00140 0.62 +0.1
154,410 + MPMX19_00140 0.62 -0.3
154,411 - MPMX19_00140 0.62 -0.6
154,411 - MPMX19_00140 0.62 +0.1
154,411 - MPMX19_00140 0.62 -0.4
154,411 - MPMX19_00140 0.62 -0.1
154,411 - MPMX19_00140 0.62 -1.1
154,411 - MPMX19_00140 0.62 +0.3
154,411 - MPMX19_00140 0.62 -0.9
154,411 - MPMX19_00140 0.62 +0.7
154,411 - MPMX19_00140 0.62 +0.8
154,411 - MPMX19_00140 0.62 -3.1
154,584 + MPMX19_00140 0.84 -1.1
154,584 + MPMX19_00140 0.84 -3.1
154,584 + MPMX19_00140 0.84 +0.2
154,584 + MPMX19_00140 0.84 +0.2
154,584 + MPMX19_00140 0.84 +1.6
154,584 + MPMX19_00140 0.84 -0.4
154,584 + MPMX19_00140 0.84 -0.7
154,584 + MPMX19_00140 0.84 -0.8
154,584 + MPMX19_00140 0.84 +0.2
154,584 + MPMX19_00140 0.84 -0.6
154,585 - MPMX19_00140 0.85 -1.9
154,585 - MPMX19_00140 0.85 +1.5
154,585 - MPMX19_00140 0.85 -1.1
154,585 - MPMX19_00140 0.85 +0.6
154,585 - MPMX19_00140 0.85 +0.5
154,882 + MPMX19_00141 0.29 -0.9
154,882 + MPMX19_00141 0.29 +0.4
154,883 - MPMX19_00141 0.30 -1.1
154,883 - MPMX19_00141 0.30 -1.1
154,883 - MPMX19_00141 0.30 +0.1
154,883 - MPMX19_00141 0.30 -0.3
154,883 - MPMX19_00141 0.30 +0.4
154,883 - MPMX19_00141 0.30 -0.7
154,883 - MPMX19_00141 0.30 -1.0
154,883 - MPMX19_00141 0.30 -0.0
154,883 - MPMX19_00141 0.30 -1.5
154,883 - MPMX19_00141 0.30 -1.2

Or see this region's nucleotide sequence