Experiment: NL-CCM; spin-x control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00129 and MPMX19_00130 are separated by 439 nucleotides MPMX19_00130 and MPMX19_00131 are separated by 112 nucleotides MPMX19_00131 and MPMX19_00132 are separated by 104 nucleotides
MPMX19_00129: MPMX19_00129 - hypothetical protein, at 140,366 to 140,632
_00129
MPMX19_00130: MPMX19_00130 - hypothetical protein, at 141,072 to 142,259
_00130
MPMX19_00131: MPMX19_00131 - hypothetical protein, at 142,372 to 142,623
_00131
MPMX19_00132: MPMX19_00132 - hypothetical protein, at 142,728 to 143,348
_00132
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.177 kb on + strand at 140.177 kb on + strand at 140.177 kb on + strand at 140.419 kb on + strand, within MPMX19_00129 at 140.470 kb on + strand, within MPMX19_00129 at 140.470 kb on + strand, within MPMX19_00129 at 140.938 kb on + strand at 140.939 kb on - strand at 140.939 kb on - strand at 141.009 kb on - strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.102 kb on + strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.103 kb on - strand at 141.266 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.441 kb on + strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.442 kb on - strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.486 kb on + strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.487 kb on - strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.644 kb on + strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.645 kb on - strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.646 kb on + strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.647 kb on - strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.760 kb on + strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.761 kb on - strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.766 kb on + strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.767 kb on - strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.770 kb on + strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.771 kb on - strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.773 kb on + strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.774 kb on - strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.779 kb on + strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 141.780 kb on - strand, within MPMX19_00130 at 142.029 kb on + strand, within MPMX19_00130 at 142.471 kb on + strand, within MPMX19_00131 at 142.471 kb on + strand, within MPMX19_00131 at 142.472 kb on - strand, within MPMX19_00131 at 142.513 kb on + strand, within MPMX19_00131 at 142.514 kb on - strand, within MPMX19_00131 at 142.829 kb on + strand, within MPMX19_00132 at 142.829 kb on + strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.830 kb on - strand, within MPMX19_00132 at 142.930 kb on + strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 142.931 kb on - strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.100 kb on + strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132 at 143.101 kb on - strand, within MPMX19_00132
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; spin-x control remove 140,177 + -2.1 140,177 + -0.8 140,177 + -2.1 140,419 + MPMX19_00129 0.20 +0.4 140,470 + MPMX19_00129 0.39 -1.8 140,470 + MPMX19_00129 0.39 -0.3 140,938 + -1.1 140,939 - -2.3 140,939 - -0.1 141,009 - +0.7 141,102 + -0.3 141,102 + +0.6 141,102 + -1.1 141,102 + -0.7 141,102 + -0.7 141,102 + -0.6 141,102 + -0.3 141,102 + +0.3 141,102 + -0.3 141,102 + +0.5 141,102 + -0.5 141,102 + +0.1 141,102 + -1.0 141,102 + +0.1 141,102 + -1.2 141,103 - -2.1 141,103 - -1.9 141,103 - +0.6 141,103 - -0.4 141,103 - -1.1 141,103 - +0.3 141,103 - -0.7 141,103 - -0.2 141,103 - -1.7 141,266 + MPMX19_00130 0.16 -0.5 141,441 + MPMX19_00130 0.31 -2.2 141,441 + MPMX19_00130 0.31 -0.0 141,441 + MPMX19_00130 0.31 -0.6 141,441 + MPMX19_00130 0.31 -0.5 141,441 + MPMX19_00130 0.31 +1.5 141,441 + MPMX19_00130 0.31 -1.1 141,442 - MPMX19_00130 0.31 -1.7 141,442 - MPMX19_00130 0.31 -0.1 141,442 - MPMX19_00130 0.31 +0.9 141,442 - MPMX19_00130 0.31 -1.3 141,442 - MPMX19_00130 0.31 -0.6 141,442 - MPMX19_00130 0.31 +1.0 141,442 - MPMX19_00130 0.31 -0.7 141,442 - MPMX19_00130 0.31 -1.5 141,486 + MPMX19_00130 0.35 -0.8 141,486 + MPMX19_00130 0.35 +0.2 141,486 + MPMX19_00130 0.35 +0.1 141,486 + MPMX19_00130 0.35 +0.6 141,486 + MPMX19_00130 0.35 -1.5 141,486 + MPMX19_00130 0.35 +1.5 141,486 + MPMX19_00130 0.35 -0.8 141,486 + MPMX19_00130 0.35 -0.7 141,486 + MPMX19_00130 0.35 -1.2 141,486 + MPMX19_00130 0.35 -0.3 141,487 - MPMX19_00130 0.35 +0.3 141,487 - MPMX19_00130 0.35 -0.6 141,487 - MPMX19_00130 0.35 -0.8 141,487 - MPMX19_00130 0.35 +0.5 141,487 - MPMX19_00130 0.35 -1.2 141,487 - MPMX19_00130 0.35 -1.3 141,487 - MPMX19_00130 0.35 -1.2 141,487 - MPMX19_00130 0.35 +1.9 141,487 - MPMX19_00130 0.35 -0.8 141,487 - MPMX19_00130 0.35 -0.1 141,487 - MPMX19_00130 0.35 -0.8 141,487 - MPMX19_00130 0.35 -0.9 141,487 - MPMX19_00130 0.35 +0.8 141,487 - MPMX19_00130 0.35 -0.2 141,487 - MPMX19_00130 0.35 -0.9 141,644 + MPMX19_00130 0.48 -1.8 141,644 + MPMX19_00130 0.48 -0.7 141,644 + MPMX19_00130 0.48 +0.5 141,644 + MPMX19_00130 0.48 -0.4 141,644 + MPMX19_00130 0.48 -2.2 141,644 + MPMX19_00130 0.48 -2.3 141,644 + MPMX19_00130 0.48 -0.7 141,644 + MPMX19_00130 0.48 -1.5 141,644 + MPMX19_00130 0.48 -1.1 141,645 - MPMX19_00130 0.48 +0.1 141,645 - MPMX19_00130 0.48 +0.4 141,645 - MPMX19_00130 0.48 +0.3 141,645 - MPMX19_00130 0.48 +0.1 141,645 - MPMX19_00130 0.48 -0.9 141,645 - MPMX19_00130 0.48 -1.5 141,645 - MPMX19_00130 0.48 +0.3 141,646 + MPMX19_00130 0.48 -1.4 141,646 + MPMX19_00130 0.48 +0.0 141,646 + MPMX19_00130 0.48 -0.4 141,647 - MPMX19_00130 0.48 +0.4 141,647 - MPMX19_00130 0.48 -1.1 141,647 - MPMX19_00130 0.48 -1.4 141,647 - MPMX19_00130 0.48 +0.4 141,760 + MPMX19_00130 0.58 -1.0 141,760 + MPMX19_00130 0.58 -1.0 141,760 + MPMX19_00130 0.58 -1.2 141,760 + MPMX19_00130 0.58 -1.6 141,761 - MPMX19_00130 0.58 +0.2 141,761 - MPMX19_00130 0.58 +0.7 141,766 + MPMX19_00130 0.58 -0.5 141,766 + MPMX19_00130 0.58 +0.3 141,766 + MPMX19_00130 0.58 -1.2 141,766 + MPMX19_00130 0.58 -0.0 141,766 + MPMX19_00130 0.58 -0.6 141,766 + MPMX19_00130 0.58 +0.2 141,766 + MPMX19_00130 0.58 -0.2 141,766 + MPMX19_00130 0.58 -0.0 141,766 + MPMX19_00130 0.58 -0.4 141,766 + MPMX19_00130 0.58 +0.4 141,766 + MPMX19_00130 0.58 -0.8 141,766 + MPMX19_00130 0.58 -0.9 141,766 + MPMX19_00130 0.58 +0.3 141,766 + MPMX19_00130 0.58 -0.6 141,766 + MPMX19_00130 0.58 +0.3 141,766 + MPMX19_00130 0.58 -1.3 141,766 + MPMX19_00130 0.58 -1.1 141,766 + MPMX19_00130 0.58 -1.0 141,766 + MPMX19_00130 0.58 -0.4 141,766 + MPMX19_00130 0.58 -1.0 141,767 - MPMX19_00130 0.59 -0.7 141,767 - MPMX19_00130 0.59 -1.2 141,767 - MPMX19_00130 0.59 -1.1 141,767 - MPMX19_00130 0.59 +0.1 141,767 - MPMX19_00130 0.59 +0.1 141,767 - MPMX19_00130 0.59 -0.9 141,767 - MPMX19_00130 0.59 -1.0 141,767 - MPMX19_00130 0.59 +1.3 141,767 - MPMX19_00130 0.59 +0.5 141,767 - MPMX19_00130 0.59 +0.7 141,770 + MPMX19_00130 0.59 +0.1 141,770 + MPMX19_00130 0.59 -2.0 141,770 + MPMX19_00130 0.59 -1.1 141,771 - MPMX19_00130 0.59 +0.4 141,771 - MPMX19_00130 0.59 -0.1 141,771 - MPMX19_00130 0.59 -2.1 141,771 - MPMX19_00130 0.59 -0.3 141,773 + MPMX19_00130 0.59 -1.9 141,773 + MPMX19_00130 0.59 +0.4 141,774 - MPMX19_00130 0.59 +1.1 141,774 - MPMX19_00130 0.59 -0.4 141,779 + MPMX19_00130 0.60 -1.2 141,779 + MPMX19_00130 0.60 -0.6 141,779 + MPMX19_00130 0.60 -1.8 141,779 + MPMX19_00130 0.60 -0.2 141,779 + MPMX19_00130 0.60 -1.0 141,779 + MPMX19_00130 0.60 -0.4 141,780 - MPMX19_00130 0.60 +0.5 141,780 - MPMX19_00130 0.60 -2.1 141,780 - MPMX19_00130 0.60 -1.3 141,780 - MPMX19_00130 0.60 -0.3 141,780 - MPMX19_00130 0.60 -2.4 141,780 - MPMX19_00130 0.60 -0.5 141,780 - MPMX19_00130 0.60 +0.8 142,029 + MPMX19_00130 0.81 -1.7 142,471 + MPMX19_00131 0.39 -0.8 142,471 + MPMX19_00131 0.39 -0.6 142,472 - MPMX19_00131 0.40 -0.8 142,513 + MPMX19_00131 0.56 +0.3 142,514 - MPMX19_00131 0.56 +1.3 142,829 + MPMX19_00132 0.16 -0.8 142,829 + MPMX19_00132 0.16 -1.5 142,830 - MPMX19_00132 0.16 +0.5 142,830 - MPMX19_00132 0.16 +0.4 142,830 - MPMX19_00132 0.16 -0.1 142,830 - MPMX19_00132 0.16 -0.8 142,930 + MPMX19_00132 0.33 -0.4 142,931 - MPMX19_00132 0.33 -0.7 142,931 - MPMX19_00132 0.33 -0.8 143,100 + MPMX19_00132 0.60 +1.0 143,100 + MPMX19_00132 0.60 -1.1 143,101 - MPMX19_00132 0.60 -0.2 143,101 - MPMX19_00132 0.60 +0.5 143,101 - MPMX19_00132 0.60 -0.8
Or see this region's nucleotide sequence