Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00098

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM; spin-x control
				remove
104,485	+			-0.5
104,485	+			+0.2
104,485	+			-0.1
104,485	+			-0.1
104,486	-			+1.5
104,486	-			+0.7
104,486	-			-0.9
104,486	-			+1.0
104,512	-			-1.8
104,603	+	MPMX19_00096	0.22	-0.5
104,603	+	MPMX19_00096	0.22	+0.7
104,603	+	MPMX19_00096	0.22	+0.8
104,603	+	MPMX19_00096	0.22	-1.7
104,603	+	MPMX19_00096	0.22	+1.0
104,603	+	MPMX19_00096	0.22	-0.7
104,603	+	MPMX19_00096	0.22	-3.0
104,603	+	MPMX19_00096	0.22	-1.6
104,603	+	MPMX19_00096	0.22	+0.9
104,603	+	MPMX19_00096	0.22	-1.2
104,603	+	MPMX19_00096	0.22	+1.3
104,603	+	MPMX19_00096	0.22	-2.7
104,603	+	MPMX19_00096	0.22	-0.5
104,603	+	MPMX19_00096	0.22	-1.3
104,603	+	MPMX19_00096	0.22	-0.5
104,603	+	MPMX19_00096	0.22	+0.4
104,604	-	MPMX19_00096	0.22	-0.7
104,604	-	MPMX19_00096	0.22	-0.4
104,604	-	MPMX19_00096	0.22	+1.5
104,604	-	MPMX19_00096	0.22	+3.1
104,604	-	MPMX19_00096	0.22	-1.2
104,604	-	MPMX19_00096	0.22	-1.5
104,604	-	MPMX19_00096	0.22	+0.5
104,604	-	MPMX19_00096	0.22	+2.1
104,604	-	MPMX19_00096	0.22	+0.4
104,604	-	MPMX19_00096	0.22	-1.1
104,604	-	MPMX19_00096	0.22	-0.1
104,604	-	MPMX19_00096	0.22	+0.3
104,604	-	MPMX19_00096	0.22	-1.5
104,604	-	MPMX19_00096	0.22	-1.2
104,604	-	MPMX19_00096	0.22	+1.2
104,604	-	MPMX19_00096	0.22	-1.1
104,604	-	MPMX19_00096	0.22	+1.1
104,604	-	MPMX19_00096	0.22	-1.4
104,604	-	MPMX19_00096	0.22	-0.7
104,604	-	MPMX19_00096	0.22	+0.2
104,777	+	MPMX19_00096	0.58	-0.5
104,777	+	MPMX19_00096	0.58	+0.6
104,777	+	MPMX19_00096	0.58	+0.2
104,777	+	MPMX19_00096	0.58	+0.8
104,778	-	MPMX19_00096	0.58	+0.5
104,778	-	MPMX19_00096	0.58	+0.0
104,778	-	MPMX19_00096	0.58	+1.2
104,778	-	MPMX19_00096	0.58	-0.1
104,795	+	MPMX19_00096	0.62	+0.5
104,796	-	MPMX19_00096	0.62	-1.0
104,796	-	MPMX19_00096	0.62	+1.6
104,796	-	MPMX19_00096	0.62	-0.8
104,796	-	MPMX19_00096	0.62	+0.2
104,843	+	MPMX19_00096	0.72	-1.3
104,843	+	MPMX19_00096	0.72	+0.4
104,843	+	MPMX19_00096	0.72	-1.9
104,843	+	MPMX19_00096	0.72	-0.4
104,843	+	MPMX19_00096	0.72	-0.4
104,843	+	MPMX19_00096	0.72	+0.2
104,843	+	MPMX19_00096	0.72	-0.2
104,843	+	MPMX19_00096	0.72	+0.5
104,843	+	MPMX19_00096	0.72	+0.1
104,843	+	MPMX19_00096	0.72	-0.6
104,844	-	MPMX19_00096	0.72	-1.5
104,844	-	MPMX19_00096	0.72	-0.7
104,844	-	MPMX19_00096	0.72	-1.0
104,844	-	MPMX19_00096	0.72	-0.9
104,844	-	MPMX19_00096	0.72	-0.8
104,844	-	MPMX19_00096	0.72	+0.4
104,844	-	MPMX19_00096	0.72	+0.1
104,844	-	MPMX19_00096	0.72	-0.7
104,844	-	MPMX19_00096	0.72	+0.2
104,844	-	MPMX19_00096	0.72	+0.4
104,844	-	MPMX19_00096	0.72	+0.1
104,844	-	MPMX19_00096	0.72	+0.5
104,844	-	MPMX19_00096	0.72	+0.3
104,844	-	MPMX19_00096	0.72	-0.6
104,844	-	MPMX19_00096	0.72	-0.2
104,844	-	MPMX19_00096	0.72	+0.5
104,844	-	MPMX19_00096	0.72	-1.7
105,014	+			-0.8
105,014	+			-0.3
105,014	+			+0.5
105,014	+			+0.8
105,014	+			+0.6
105,014	+			-0.8
105,015	-			-1.5
105,015	-			+1.0
105,015	-			+0.6
105,015	-			-0.3
105,015	-			+0.7
105,015	-			-0.1
105,015	-			+0.6
105,044	+	MPMX19_00097	0.15	-2.0
105,044	+	MPMX19_00097	0.15	+0.5
105,044	+	MPMX19_00097	0.15	-0.3
105,044	+	MPMX19_00097	0.15	-1.7
105,044	+	MPMX19_00097	0.15	-0.3
105,045	-	MPMX19_00097	0.15	-0.3
105,045	-	MPMX19_00097	0.15	+1.1
105,045	-	MPMX19_00097	0.15	+0.7
105,045	-	MPMX19_00097	0.15	+0.9
105,045	-	MPMX19_00097	0.15	+0.1
105,045	-	MPMX19_00097	0.15	+0.4
105,045	-	MPMX19_00097	0.15	+0.2
105,045	-	MPMX19_00097	0.15	-0.1
105,065	+	MPMX19_00097	0.24	+1.4
105,065	+	MPMX19_00097	0.24	+0.0
105,065	+	MPMX19_00097	0.24	-0.8
105,065	+	MPMX19_00097	0.24	-0.6
105,065	+	MPMX19_00097	0.24	-1.2
105,065	+	MPMX19_00097	0.24	-0.4
105,065	+	MPMX19_00097	0.24	-2.2
105,066	-	MPMX19_00097	0.25	-0.0
105,066	-	MPMX19_00097	0.25	-1.7
105,066	-	MPMX19_00097	0.25	-0.3
105,066	-	MPMX19_00097	0.25	+0.4
105,066	-	MPMX19_00097	0.25	-0.9
105,066	-	MPMX19_00097	0.25	-0.7
105,128	+	MPMX19_00097	0.54	+0.2
105,128	+	MPMX19_00097	0.54	-0.4
105,128	+	MPMX19_00097	0.54	+0.1
105,128	+	MPMX19_00097	0.54	-0.4
105,128	+	MPMX19_00097	0.54	+0.9
105,128	+	MPMX19_00097	0.54	-1.2
105,129	-	MPMX19_00097	0.54	-0.3
105,129	-	MPMX19_00097	0.54	-0.1
105,129	-	MPMX19_00097	0.54	+0.7
105,129	-	MPMX19_00097	0.54	+0.5
105,338	+			-0.5
105,338	+			-0.5
105,338	+			-0.3
105,500	+	MPMX19_00098	0.14	-0.3
105,500	+	MPMX19_00098	0.14	+0.8
105,500	+	MPMX19_00098	0.14	+1.1
105,500	+	MPMX19_00098	0.14	-0.1
105,500	+	MPMX19_00098	0.14	+0.2
105,501	-	MPMX19_00098	0.14	-0.8
105,501	-	MPMX19_00098	0.14	-0.8
105,501	-	MPMX19_00098	0.14	+0.3
105,501	-	MPMX19_00098	0.14	+0.9
105,501	-	MPMX19_00098	0.14	+1.0
105,501	-	MPMX19_00098	0.14	-0.8
105,501	-	MPMX19_00098	0.14	-1.8
105,501	-	MPMX19_00098	0.14	-1.1
105,501	-	MPMX19_00098	0.14	-0.3
105,501	-	MPMX19_00098	0.14	+0.7
105,501	-	MPMX19_00098	0.14	+0.8
105,530	+	MPMX19_00098	0.16	-2.8
105,530	+	MPMX19_00098	0.16	-0.9
105,530	+	MPMX19_00098	0.16	+0.3
105,530	+	MPMX19_00098	0.16	+0.6
105,530	+	MPMX19_00098	0.16	-2.2
105,530	+	MPMX19_00098	0.16	-0.2
105,530	+	MPMX19_00098	0.16	+0.3
105,530	+	MPMX19_00098	0.16	+0.5
105,531	-	MPMX19_00098	0.16	+0.8
105,531	-	MPMX19_00098	0.16	-0.4
105,531	-	MPMX19_00098	0.16	+0.8
105,531	-	MPMX19_00098	0.16	+0.4
105,531	-	MPMX19_00098	0.16	-0.6
105,531	-	MPMX19_00098	0.16	-0.6
105,791	+	MPMX19_00098	0.38	-0.8
105,818	+	MPMX19_00098	0.40	+0.8
105,818	+	MPMX19_00098	0.40	+1.7
105,818	+	MPMX19_00098	0.40	+0.4
105,818	+	MPMX19_00098	0.40	-1.7
105,818	+	MPMX19_00098	0.40	-0.5
105,818	+	MPMX19_00098	0.40	-0.2
105,818	+	MPMX19_00098	0.40	+0.3
105,818	+	MPMX19_00098	0.40	+0.7
105,818	+	MPMX19_00098	0.40	+0.8
105,818	+	MPMX19_00098	0.40	-0.8
105,818	+	MPMX19_00098	0.40	+0.1
105,818	+	MPMX19_00098	0.40	-0.8
105,818	+	MPMX19_00098	0.40	-0.7
105,818	+	MPMX19_00098	0.40	-0.0
105,818	+	MPMX19_00098	0.40	-1.3
105,818	+	MPMX19_00098	0.40	+0.3
105,818	+	MPMX19_00098	0.40	+0.6
105,818	+	MPMX19_00098	0.40	+0.5
105,818	+	MPMX19_00098	0.40	+0.6
105,818	+	MPMX19_00098	0.40	-0.4
105,818	+	MPMX19_00098	0.40	-2.4
105,818	+	MPMX19_00098	0.40	-0.1
105,818	+	MPMX19_00098	0.40	-0.2
105,818	+	MPMX19_00098	0.40	-2.0
105,818	+	MPMX19_00098	0.40	+0.8
105,818	+	MPMX19_00098	0.40	+0.3
105,818	+	MPMX19_00098	0.40	+0.4
105,818	+	MPMX19_00098	0.40	-2.6
105,819	-	MPMX19_00098	0.40	-2.1
105,819	-	MPMX19_00098	0.40	-0.4
105,819	-	MPMX19_00098	0.40	+0.3
105,819	-	MPMX19_00098	0.40	+0.3
105,819	-	MPMX19_00098	0.40	-0.8
105,819	-	MPMX19_00098	0.40	+1.3
105,819	-	MPMX19_00098	0.40	+0.1
105,819	-	MPMX19_00098	0.40	-0.4
105,819	-	MPMX19_00098	0.40	-2.1
105,819	-	MPMX19_00098	0.40	-1.7
105,819	-	MPMX19_00098	0.40	-0.8
105,819	-	MPMX19_00098	0.40	-0.2
105,819	-	MPMX19_00098	0.40	-1.6
105,819	-	MPMX19_00098	0.40	-1.2
105,819	-	MPMX19_00098	0.40	-0.2
105,819	-	MPMX19_00098	0.40	+0.8
105,819	-	MPMX19_00098	0.40	+0.2
105,819	-	MPMX19_00098	0.40	-1.1
105,819	-	MPMX19_00098	0.40	-0.3
105,819	-	MPMX19_00098	0.40	-0.8
105,819	-	MPMX19_00098	0.40	+0.2
105,819	-	MPMX19_00098	0.40	-0.2
105,819	-	MPMX19_00098	0.40	-0.8
105,819	-	MPMX19_00098	0.40	+0.3
105,819	-	MPMX19_00098	0.40	-0.1
105,819	-	MPMX19_00098	0.40	+0.1
105,819	-	MPMX19_00098	0.40	+1.0
105,819	-	MPMX19_00098	0.40	+0.6
105,819	-	MPMX19_00098	0.40	+0.2
105,819	-	MPMX19_00098	0.40	-2.0
105,819	-	MPMX19_00098	0.40	-1.0
105,819	-	MPMX19_00098	0.40	-1.1
105,819	-	MPMX19_00098	0.40	-0.4
105,833	+	MPMX19_00098	0.42	+0.4
105,833	+	MPMX19_00098	0.42	-0.3
105,833	+	MPMX19_00098	0.42	+0.6
105,834	-	MPMX19_00098	0.42	+0.4
105,834	-	MPMX19_00098	0.42	+0.5
105,834	-	MPMX19_00098	0.42	+1.2
105,834	-	MPMX19_00098	0.42	+0.9
106,160	+	MPMX19_00098	0.69	+0.2
106,160	+	MPMX19_00098	0.69	-1.1
106,160	+	MPMX19_00098	0.69	+0.7
106,160	+	MPMX19_00098	0.69	+0.3
106,160	+	MPMX19_00098	0.69	+1.8
106,160	+	MPMX19_00098	0.69	+1.6
106,160	+	MPMX19_00098	0.69	-1.5
106,160	+	MPMX19_00098	0.69	+1.5
106,161	-	MPMX19_00098	0.69	-0.2
106,161	-	MPMX19_00098	0.69	+0.5
106,161	-	MPMX19_00098	0.69	-1.5
106,161	-	MPMX19_00098	0.69	+0.4
106,161	-	MPMX19_00098	0.69	-0.1
106,161	-	MPMX19_00098	0.69	-1.7
106,181	+	MPMX19_00098	0.71	+0.1
106,181	+	MPMX19_00098	0.71	-0.7
106,181	+	MPMX19_00098	0.71	-2.1
106,181	+	MPMX19_00098	0.71	-1.0
106,182	-	MPMX19_00098	0.71	-0.6
106,182	-	MPMX19_00098	0.71	-0.2
106,182	-	MPMX19_00098	0.71	-0.9
106,182	-	MPMX19_00098	0.71	-1.5
106,440	-			-1.1
106,440	-			-0.3
106,440	-			-1.4
106,514	+			+1.0
106,514	+			-0.9
106,515	-			-0.1
106,515	-			-0.8
106,559	+			+0.0
106,559	+			+1.3
106,559	+			-0.4
106,560	-			+1.5
106,560	-			-0.0
106,560	-			-0.4
106,560	-			-1.2
106,560	-			+0.6
106,560	-			+0.1
106,560	-			-2.0
106,687	+	MPMX19_00099	0.27	+0.1
106,688	-	MPMX19_00099	0.27	+0.4
106,688	-	MPMX19_00099	0.27	-1.2
107,025	-			-1.3
107,075	+			+0.7
107,075	+			+0.6
107,076	-			-0.3
107,076	-			+0.2
107,076	-			+0.5
107,103	+			+0.2
107,103	+			-0.4
107,103	+			-0.1
107,103	+			-0.6
107,104	-			-0.1
107,232	+	MPMX19_00100	0.37	+0.1
107,232	+	MPMX19_00100	0.37	-1.5
107,232	+	MPMX19_00100	0.37	-0.1
107,233	-	MPMX19_00100	0.37	+0.1
107,310	+	MPMX19_00100	0.68	-1.3
107,310	+	MPMX19_00100	0.68	-1.2
107,310	+	MPMX19_00100	0.68	-0.4
107,310	+	MPMX19_00100	0.68	+0.3
107,310	+	MPMX19_00100	0.68	-1.3
107,310	+	MPMX19_00100	0.68	-0.2
107,310	+	MPMX19_00100	0.68	+0.4
107,311	-	MPMX19_00100	0.69	+0.8
107,311	-	MPMX19_00100	0.69	+0.3
107,311	-	MPMX19_00100	0.69	-0.5
107,311	-	MPMX19_00100	0.69	-1.5
107,311	-	MPMX19_00100	0.69	-0.5
107,311	-	MPMX19_00100	0.69	-1.7

Or see this region's nucleotide sequence