Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF925 and GFF926 are separated by 129 nucleotides GFF926 and GFF927 are separated by 177 nucleotides GFF927 and GFF928 are separated by 66 nucleotides GFF928 and GFF929 are separated by 244 nucleotides
GFF925 - Glutamyl-tRNA(Gln) amidotransferase subunit C, at 997,430 to 997,717
GFF925
GFF926 - Putative pre-16S rRNA nuclease, at 997,847 to 998,365
GFF926
GFF927 - hypothetical protein, at 998,543 to 999,478
GFF927
GFF928 - hypothetical protein, at 999,545 to 999,970
GFF928
GFF929 - Aspartate carbamoyltransferase, at 1,000,215 to 1,001,162
GFF929
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -2
-1
0
1
2 at 997.747 kb on - strand at 997.749 kb on - strand at 997.749 kb on - strand at 997.824 kb on - strand at 997.835 kb on + strand at 998.499 kb on + strand at 998.500 kb on - strand at 998.500 kb on - strand at 998.660 kb on + strand, within GFF927 at 998.660 kb on + strand, within GFF927 at 998.661 kb on - strand, within GFF927 at 998.661 kb on - strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.873 kb on + strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.874 kb on - strand, within GFF927 at 998.875 kb on + strand, within GFF927 at 998.904 kb on - strand, within GFF927 at 999.023 kb on + strand, within GFF927 at 999.023 kb on + strand, within GFF927 at 999.024 kb on - strand, within GFF927 at 999.024 kb on - strand, within GFF927 at 999.053 kb on + strand, within GFF927 at 999.054 kb on - strand, within GFF927 at 999.054 kb on - strand, within GFF927 at 999.054 kb on - strand, within GFF927 at 999.055 kb on + strand, within GFF927 at 999.056 kb on - strand, within GFF927 at 999.356 kb on + strand, within GFF927 at 999.357 kb on - strand, within GFF927 at 999.531 kb on + strand at 999.532 kb on - strand at 999.532 kb on - strand at 999.630 kb on + strand, within GFF928 at 999.631 kb on - strand, within GFF928 at 999.654 kb on + strand, within GFF928 at 999.675 kb on + strand, within GFF928 at 999.676 kb on - strand, within GFF928 at 999.678 kb on + strand, within GFF928 at 999.801 kb on + strand, within GFF928 at 999.804 kb on + strand, within GFF928 at 999.805 kb on - strand, within GFF928 at 999.970 kb on + strand at 999.970 kb on + strand at 999.970 kb on + strand at 999.971 kb on - strand at 999.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 997,747 - +1.1 997,749 - +0.3 997,749 - -0.6 997,824 - -0.8 997,835 + -0.5 998,499 + -0.2 998,500 - -0.8 998,500 - +0.5 998,660 + GFF927 0.12 -0.9 998,660 + GFF927 0.12 -0.1 998,661 - GFF927 0.13 +0.2 998,661 - GFF927 0.13 +0.8 998,873 + GFF927 0.35 +0.1 998,873 + GFF927 0.35 +0.0 998,873 + GFF927 0.35 +0.5 998,873 + GFF927 0.35 +1.8 998,873 + GFF927 0.35 -0.4 998,873 + GFF927 0.35 +0.4 998,873 + GFF927 0.35 +0.7 998,874 - GFF927 0.35 -0.1 998,874 - GFF927 0.35 +0.6 998,874 - GFF927 0.35 -0.2 998,874 - GFF927 0.35 -0.4 998,874 - GFF927 0.35 +1.4 998,874 - GFF927 0.35 -0.4 998,874 - GFF927 0.35 +0.1 998,874 - GFF927 0.35 -1.0 998,874 - GFF927 0.35 -0.1 998,875 + GFF927 0.35 +1.5 998,904 - GFF927 0.39 +1.1 999,023 + GFF927 0.51 -0.5 999,023 + GFF927 0.51 -0.4 999,024 - GFF927 0.51 +0.4 999,024 - GFF927 0.51 -0.7 999,053 + GFF927 0.54 -0.3 999,054 - GFF927 0.55 +0.8 999,054 - GFF927 0.55 -0.1 999,054 - GFF927 0.55 +0.2 999,055 + GFF927 0.55 -0.2 999,056 - GFF927 0.55 -0.5 999,356 + GFF927 0.87 -0.6 999,357 - GFF927 0.87 -1.8 999,531 + -1.5 999,532 - +1.5 999,532 - -0.5 999,630 + GFF928 0.20 -0.2 999,631 - GFF928 0.20 +0.1 999,654 + GFF928 0.26 +0.4 999,675 + GFF928 0.31 +0.1 999,676 - GFF928 0.31 +0.3 999,678 + GFF928 0.31 +0.6 999,801 + GFF928 0.60 +0.7 999,804 + GFF928 0.61 -1.3 999,805 - GFF928 0.61 -1.1 999,970 + -0.8 999,970 + -0.5 999,970 + -1.6 999,971 - -0.2 999,977 + -0.9
Or see this region's nucleotide sequence