Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF887 and GFF888 overlap by 1 nucleotides GFF888 and GFF889 are separated by 99 nucleotides GFF889 and GFF890 are separated by 66 nucleotides GFF890 and GFF891 are separated by 331 nucleotides
GFF887 - hypothetical protein, at 958,523 to 959,038
GFF887
GFF888 - hypothetical protein, at 959,038 to 959,610
GFF888
GFF889 - NAD-dependent protein deacetylase, at 959,710 to 960,480
GFF889
GFF890 - Lactoylglutathione lyase, at 960,547 to 960,969
GFF890
GFF891 - hypothetical protein, at 961,301 to 962,143
GFF891
Position (kb) 959
960
961 Strain fitness (log2 ratio) -2
-1
0
1 at 958.741 kb on + strand, within GFF887 at 958.741 kb on + strand, within GFF887 at 958.742 kb on - strand, within GFF887 at 958.742 kb on - strand, within GFF887 at 959.506 kb on + strand, within GFF888 at 959.660 kb on + strand at 959.662 kb on - strand at 959.662 kb on - strand at 960.056 kb on + strand, within GFF889 at 960.057 kb on - strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.086 kb on + strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.087 kb on - strand, within GFF889 at 960.166 kb on - strand, within GFF889 at 960.473 kb on + strand at 960.473 kb on + strand at 960.473 kb on + strand at 960.473 kb on + strand at 960.474 kb on - strand at 960.474 kb on - strand at 960.474 kb on - strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.480 kb on + strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.481 kb on - strand at 960.492 kb on + strand at 960.492 kb on + strand at 960.493 kb on - strand at 960.493 kb on - strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.530 kb on + strand at 960.531 kb on - strand at 960.604 kb on + strand, within GFF890 at 960.604 kb on + strand, within GFF890 at 960.605 kb on - strand, within GFF890 at 960.662 kb on - strand, within GFF890 at 960.721 kb on + strand, within GFF890 at 960.722 kb on - strand, within GFF890 at 960.722 kb on - strand, within GFF890 at 960.793 kb on + strand, within GFF890 at 960.794 kb on - strand, within GFF890 at 960.794 kb on - strand, within GFF890 at 960.856 kb on + strand, within GFF890 at 960.856 kb on + strand, within GFF890 at 960.857 kb on - strand, within GFF890 at 961.099 kb on + strand at 961.140 kb on + strand at 961.140 kb on + strand at 961.140 kb on + strand at 961.346 kb on + strand at 961.347 kb on - strand at 961.367 kb on - strand at 961.399 kb on + strand, within GFF891 at 961.400 kb on - strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.430 kb on + strand, within GFF891 at 961.431 kb on - strand, within GFF891 at 961.436 kb on + strand, within GFF891 at 961.437 kb on - strand, within GFF891 at 961.437 kb on - strand, within GFF891 at 961.440 kb on + strand, within GFF891 at 961.441 kb on - strand, within GFF891 at 961.441 kb on - strand, within GFF891
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 958,741 + GFF887 0.42 +0.2 958,741 + GFF887 0.42 -0.5 958,742 - GFF887 0.42 -1.0 958,742 - GFF887 0.42 -0.0 959,506 + GFF888 0.82 +0.1 959,660 + -0.3 959,662 - +1.1 959,662 - -0.9 960,056 + GFF889 0.45 +0.2 960,057 - GFF889 0.45 -0.5 960,086 + GFF889 0.49 -0.1 960,086 + GFF889 0.49 -0.2 960,086 + GFF889 0.49 +0.2 960,086 + GFF889 0.49 -1.8 960,086 + GFF889 0.49 +0.2 960,086 + GFF889 0.49 +0.2 960,086 + GFF889 0.49 +1.0 960,087 - GFF889 0.49 -0.3 960,087 - GFF889 0.49 -0.5 960,087 - GFF889 0.49 +0.8 960,087 - GFF889 0.49 +0.5 960,087 - GFF889 0.49 -0.9 960,087 - GFF889 0.49 -0.1 960,087 - GFF889 0.49 +0.6 960,166 - GFF889 0.59 -0.5 960,473 + +0.2 960,473 + +0.8 960,473 + +0.0 960,473 + +0.2 960,474 - -0.5 960,474 - +0.5 960,474 - +0.2 960,480 + -1.1 960,480 + -0.3 960,480 + +0.3 960,480 + +0.7 960,480 + +0.2 960,480 + -1.0 960,481 - +0.6 960,481 - +1.4 960,481 - -0.6 960,481 - -1.1 960,481 - +0.9 960,492 + -0.3 960,492 + +0.8 960,493 - -0.9 960,493 - +1.6 960,530 + -0.2 960,530 + -0.4 960,530 + -1.3 960,530 + -0.2 960,531 - +0.6 960,604 + GFF890 0.13 +0.1 960,604 + GFF890 0.13 +0.3 960,605 - GFF890 0.14 -0.2 960,662 - GFF890 0.27 +0.6 960,721 + GFF890 0.41 -0.0 960,722 - GFF890 0.41 +0.4 960,722 - GFF890 0.41 -0.7 960,793 + GFF890 0.58 -0.4 960,794 - GFF890 0.58 -0.1 960,794 - GFF890 0.58 -0.5 960,856 + GFF890 0.73 -0.4 960,856 + GFF890 0.73 +0.8 960,857 - GFF890 0.73 -0.4 961,099 + -0.4 961,140 + -0.1 961,140 + +0.7 961,140 + -1.1 961,346 + -0.4 961,347 - -1.1 961,367 - -1.5 961,399 + GFF891 0.12 +0.3 961,400 - GFF891 0.12 -0.5 961,430 + GFF891 0.15 +0.1 961,430 + GFF891 0.15 +0.2 961,430 + GFF891 0.15 +0.9 961,431 - GFF891 0.15 -0.5 961,436 + GFF891 0.16 +0.3 961,437 - GFF891 0.16 +0.7 961,437 - GFF891 0.16 -0.1 961,440 + GFF891 0.16 +0.6 961,441 - GFF891 0.17 +0.0 961,441 - GFF891 0.17 +0.8
Or see this region's nucleotide sequence