Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF869 and GFF870 are separated by 356 nucleotides GFF870 and GFF871 are separated by 802 nucleotides
GFF869 - Lipid A export ATP-binding/permease protein MsbA, at 940,994 to 942,844
GFF869
GFF870 - Prophage integrase IntS, at 943,201 to 944,439
GFF870
GFF871 - hypothetical protein, at 945,242 to 945,439
GFF871
Position (kb) 943
944
945 Strain fitness (log2 ratio) -2
-1
0
1 at 943.250 kb on - strand at 943.250 kb on - strand at 943.283 kb on + strand at 943.369 kb on + strand, within GFF870 at 943.369 kb on + strand, within GFF870 at 943.370 kb on - strand, within GFF870 at 943.370 kb on - strand, within GFF870 at 943.451 kb on + strand, within GFF870 at 943.451 kb on + strand, within GFF870 at 943.452 kb on - strand, within GFF870 at 943.452 kb on - strand, within GFF870 at 943.519 kb on - strand, within GFF870 at 943.735 kb on + strand, within GFF870 at 943.773 kb on + strand, within GFF870 at 943.773 kb on + strand, within GFF870 at 943.774 kb on - strand, within GFF870 at 943.774 kb on - strand, within GFF870 at 943.782 kb on - strand, within GFF870 at 943.867 kb on + strand, within GFF870 at 943.868 kb on - strand, within GFF870 at 943.868 kb on - strand, within GFF870 at 943.976 kb on + strand, within GFF870 at 943.976 kb on + strand, within GFF870 at 943.977 kb on - strand, within GFF870 at 943.977 kb on - strand, within GFF870 at 943.977 kb on - strand, within GFF870 at 944.103 kb on + strand, within GFF870 at 944.111 kb on + strand, within GFF870 at 944.112 kb on - strand, within GFF870 at 944.112 kb on - strand, within GFF870 at 944.112 kb on - strand, within GFF870 at 944.310 kb on + strand, within GFF870 at 944.390 kb on + strand at 944.390 kb on + strand at 944.391 kb on - strand at 944.451 kb on + strand at 944.451 kb on + strand at 944.452 kb on - strand at 944.464 kb on - strand at 944.464 kb on - strand at 944.493 kb on + strand at 944.494 kb on - strand at 944.494 kb on - strand at 944.494 kb on - strand at 944.494 kb on - strand at 944.518 kb on + strand at 944.570 kb on - strand at 944.603 kb on + strand at 944.604 kb on - strand at 944.783 kb on - strand at 944.808 kb on + strand at 944.808 kb on + strand at 944.809 kb on - strand at 944.809 kb on - strand at 944.825 kb on - strand at 944.841 kb on + strand at 944.862 kb on + strand at 944.864 kb on + strand at 944.895 kb on - strand at 944.900 kb on - strand at 944.927 kb on - strand at 944.963 kb on + strand at 944.964 kb on - strand at 944.969 kb on + strand at 944.978 kb on - strand at 944.993 kb on - strand at 945.069 kb on - strand at 945.099 kb on - strand at 945.135 kb on + strand at 945.136 kb on - strand at 945.136 kb on - strand at 945.136 kb on - strand at 945.311 kb on + strand, within GFF871 at 945.312 kb on - strand, within GFF871 at 945.312 kb on - strand, within GFF871 at 945.393 kb on - strand, within GFF871 at 945.393 kb on - strand, within GFF871
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 943,250 - +0.0 943,250 - -0.6 943,283 + -0.7 943,369 + GFF870 0.14 -0.1 943,369 + GFF870 0.14 +0.2 943,370 - GFF870 0.14 +1.0 943,370 - GFF870 0.14 -0.5 943,451 + GFF870 0.20 -0.3 943,451 + GFF870 0.20 -1.4 943,452 - GFF870 0.20 +0.6 943,452 - GFF870 0.20 +0.5 943,519 - GFF870 0.26 +1.0 943,735 + GFF870 0.43 -0.9 943,773 + GFF870 0.46 -0.3 943,773 + GFF870 0.46 -1.1 943,774 - GFF870 0.46 -0.3 943,774 - GFF870 0.46 -0.3 943,782 - GFF870 0.47 +0.1 943,867 + GFF870 0.54 -0.2 943,868 - GFF870 0.54 +0.1 943,868 - GFF870 0.54 -0.5 943,976 + GFF870 0.63 -0.8 943,976 + GFF870 0.63 -1.2 943,977 - GFF870 0.63 -0.3 943,977 - GFF870 0.63 -0.4 943,977 - GFF870 0.63 +0.8 944,103 + GFF870 0.73 +0.3 944,111 + GFF870 0.73 -1.3 944,112 - GFF870 0.74 +0.8 944,112 - GFF870 0.74 +0.5 944,112 - GFF870 0.74 +0.4 944,310 + GFF870 0.90 -0.5 944,390 + +0.3 944,390 + -0.1 944,391 - +0.7 944,451 + +0.3 944,451 + +0.2 944,452 - +0.5 944,464 - -0.1 944,464 - -0.2 944,493 + -1.1 944,494 - +0.1 944,494 - +0.2 944,494 - +0.4 944,494 - -0.8 944,518 + -0.4 944,570 - +0.8 944,603 + +0.4 944,604 - -0.4 944,783 - -1.0 944,808 + +1.3 944,808 + -0.0 944,809 - -0.5 944,809 - -1.9 944,825 - +0.2 944,841 + +0.1 944,862 + -0.6 944,864 + -0.3 944,895 - +0.2 944,900 - -1.5 944,927 - -0.2 944,963 + +0.9 944,964 - -0.6 944,969 + +0.6 944,978 - -0.4 944,993 - +0.1 945,069 - -1.5 945,099 - -1.2 945,135 + -1.5 945,136 - -0.2 945,136 - -0.3 945,136 - -0.4 945,311 + GFF871 0.35 +1.7 945,312 - GFF871 0.35 +0.1 945,312 - GFF871 0.35 -0.3 945,393 - GFF871 0.76 +0.0 945,393 - GFF871 0.76 -0.8
Or see this region's nucleotide sequence