Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF824 and GFF825 overlap by 4 nucleotides GFF825 and GFF826 are separated by 70 nucleotides GFF826 and GFF827 are separated by 6 nucleotides GFF827 and GFF828 are separated by 58 nucleotides
GFF824 - putative oxidoreductase/MSMEI_2347, at 888,797 to 889,633
GFF824
GFF825 - Magnetosome protein MamB, at 889,630 to 890,541
GFF825
GFF826 - hypothetical protein, at 890,612 to 891,328
GFF826
GFF827 - hypothetical protein, at 891,335 to 891,571
GFF827
GFF828 - Adenosylcobinamide-GDP ribazoletransferase, at 891,630 to 892,418
GFF828
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1 at 889.632 kb on - strand at 889.844 kb on + strand, within GFF825 at 890.165 kb on + strand, within GFF825 at 890.165 kb on + strand, within GFF825 at 890.456 kb on + strand at 890.457 kb on - strand at 890.762 kb on + strand, within GFF826 at 890.763 kb on - strand, within GFF826 at 890.763 kb on - strand, within GFF826 at 890.763 kb on - strand, within GFF826 at 890.827 kb on - strand, within GFF826 at 891.016 kb on - strand, within GFF826 at 891.072 kb on + strand, within GFF826 at 891.079 kb on - strand, within GFF826 at 891.648 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 889,632 - +0.3 889,844 + GFF825 0.23 -0.2 890,165 + GFF825 0.59 +0.4 890,165 + GFF825 0.59 -0.6 890,456 + -0.2 890,457 - -1.4 890,762 + GFF826 0.21 -0.3 890,763 - GFF826 0.21 -0.4 890,763 - GFF826 0.21 -1.2 890,763 - GFF826 0.21 -0.0 890,827 - GFF826 0.30 -0.3 891,016 - GFF826 0.56 -0.6 891,072 + GFF826 0.64 -0.0 891,079 - GFF826 0.65 +0.7 891,648 - -1.2
Or see this region's nucleotide sequence