Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF822 and GFF823 are separated by 77 nucleotides GFF823 and GFF824 are separated by 146 nucleotides GFF824 and GFF825 overlap by 4 nucleotides GFF825 and GFF826 are separated by 70 nucleotides
GFF822 - hypothetical protein, at 887,626 to 888,195
GFF822
GFF823 - hypothetical protein, at 888,273 to 888,650
GFF823
GFF824 - putative oxidoreductase/MSMEI_2347, at 888,797 to 889,633
GFF824
GFF825 - Magnetosome protein MamB, at 889,630 to 890,541
GFF825
GFF826 - hypothetical protein, at 890,612 to 891,328
GFF826
Position (kb) 888
889
890 Strain fitness (log2 ratio) -1
0
1 at 888.860 kb on + strand at 888.861 kb on - strand at 888.956 kb on + strand, within GFF824 at 888.957 kb on - strand, within GFF824 at 888.957 kb on - strand, within GFF824 at 888.957 kb on - strand, within GFF824 at 888.957 kb on - strand, within GFF824 at 889.122 kb on - strand, within GFF824 at 889.122 kb on - strand, within GFF824 at 889.296 kb on - strand, within GFF824 at 889.296 kb on - strand, within GFF824 at 889.370 kb on + strand, within GFF824 at 889.370 kb on + strand, within GFF824 at 889.371 kb on - strand, within GFF824 at 889.371 kb on - strand, within GFF824 at 889.371 kb on - strand, within GFF824 at 889.632 kb on - strand at 889.844 kb on + strand, within GFF825 at 890.165 kb on + strand, within GFF825 at 890.165 kb on + strand, within GFF825 at 890.456 kb on + strand at 890.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 888,860 + -0.8 888,861 - +0.2 888,956 + GFF824 0.19 -0.2 888,957 - GFF824 0.19 -0.2 888,957 - GFF824 0.19 -0.4 888,957 - GFF824 0.19 -0.8 888,957 - GFF824 0.19 +0.5 889,122 - GFF824 0.39 -0.1 889,122 - GFF824 0.39 -0.1 889,296 - GFF824 0.60 +1.2 889,296 - GFF824 0.60 +0.0 889,370 + GFF824 0.68 -0.4 889,370 + GFF824 0.68 +0.6 889,371 - GFF824 0.69 -0.7 889,371 - GFF824 0.69 +0.8 889,371 - GFF824 0.69 +0.4 889,632 - +0.3 889,844 + GFF825 0.23 -0.2 890,165 + GFF825 0.59 +0.4 890,165 + GFF825 0.59 -0.6 890,456 + -0.2 890,457 - -1.4
Or see this region's nucleotide sequence