Strain Fitness in Xanthobacter sp. DMC5 around GFF771

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF769 and GFF770 overlap by 4 nucleotidesGFF770 and GFF771 are separated by 20 nucleotidesGFF771 and GFF772 are separated by 86 nucleotides GFF769 - hypothetical protein, at 822,068 to 822,526 GFF769 GFF770 - Aliphatic sulfonates import ATP-binding protein SsuB, at 822,523 to 823,308 GFF770 GFF771 - Putative aliphatic sulfonates transport permease protein SsuC, at 823,329 to 824,180 GFF771 GFF772 - hypothetical protein, at 824,267 to 825,370 GFF772 Position (kb) 823 824 825Strain fitness (log2 ratio) -2 -1 0 1at 822.381 kb on + strand, within GFF769at 822.382 kb on - strand, within GFF769at 822.393 kb on + strand, within GFF769at 822.393 kb on + strand, within GFF769at 822.394 kb on - strand, within GFF769at 822.512 kb on + strandat 822.512 kb on + strandat 822.513 kb on - strandat 822.792 kb on + strand, within GFF770at 823.118 kb on + strand, within GFF770at 823.119 kb on - strand, within GFF770at 823.119 kb on - strand, within GFF770at 823.119 kb on - strand, within GFF770at 823.119 kb on - strand, within GFF770at 823.119 kb on - strand, within GFF770at 823.262 kb on + strandat 823.262 kb on + strandat 823.262 kb on + strandat 823.263 kb on - strandat 823.263 kb on - strandat 823.263 kb on - strandat 823.263 kb on - strandat 823.263 kb on - strandat 823.316 kb on - strandat 823.340 kb on - strandat 823.547 kb on - strand, within GFF771at 823.643 kb on + strand, within GFF771at 823.643 kb on + strand, within GFF771at 823.644 kb on - strand, within GFF771at 823.645 kb on + strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.646 kb on - strand, within GFF771at 823.882 kb on + strand, within GFF771at 823.882 kb on + strand, within GFF771at 823.883 kb on - strand, within GFF771at 823.883 kb on - strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.014 kb on + strand, within GFF771at 824.015 kb on - strand, within GFF771at 824.015 kb on - strand, within GFF771at 824.212 kb on + strandat 824.213 kb on - strandat 824.213 kb on - strandat 824.274 kb on + strandat 824.379 kb on + strand, within GFF772at 824.379 kb on + strand, within GFF772at 824.380 kb on - strand, within GFF772at 824.380 kb on - strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.541 kb on + strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.542 kb on - strand, within GFF772at 824.599 kb on - strand, within GFF772at 824.599 kb on - strand, within GFF772at 824.628 kb on + strand, within GFF772at 824.629 kb on - strand, within GFF772at 824.655 kb on + strand, within GFF772at 824.655 kb on + strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.656 kb on - strand, within GFF772at 824.827 kb on + strand, within GFF772at 824.828 kb on - strand, within GFF772at 824.886 kb on + strand, within GFF772at 824.887 kb on - strand, within GFF772at 824.887 kb on - strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.054 kb on + strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772at 825.055 kb on - strand, within GFF772

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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822,381 + GFF769 0.68 +0.1
822,382 - GFF769 0.68 +0.2
822,393 + GFF769 0.71 +1.2
822,393 + GFF769 0.71 +1.6
822,394 - GFF769 0.71 -0.6
822,512 + -0.4
822,512 + -1.0
822,513 - +0.9
822,792 + GFF770 0.34 -0.4
823,118 + GFF770 0.76 +1.2
823,119 - GFF770 0.76 +0.2
823,119 - GFF770 0.76 -0.0
823,119 - GFF770 0.76 -0.3
823,119 - GFF770 0.76 +0.0
823,119 - GFF770 0.76 -2.7
823,262 + -1.4
823,262 + +0.0
823,262 + +0.8
823,263 - +0.4
823,263 - -0.2
823,263 - -0.3
823,263 - +0.4
823,263 - -0.5
823,316 - -1.1
823,340 - +0.4
823,547 - GFF771 0.26 -0.8
823,643 + GFF771 0.37 +0.4
823,643 + GFF771 0.37 -0.9
823,644 - GFF771 0.37 +0.1
823,645 + GFF771 0.37 -0.1
823,646 - GFF771 0.37 +0.3
823,646 - GFF771 0.37 +0.0
823,646 - GFF771 0.37 +0.2
823,646 - GFF771 0.37 -0.4
823,882 + GFF771 0.65 -0.1
823,882 + GFF771 0.65 -0.3
823,883 - GFF771 0.65 +1.2
823,883 - GFF771 0.65 +0.2
824,014 + GFF771 0.80 -0.0
824,014 + GFF771 0.80 +0.0
824,014 + GFF771 0.80 +0.8
824,015 - GFF771 0.81 +0.8
824,015 - GFF771 0.81 -0.0
824,212 + -0.3
824,213 - +0.3
824,213 - +0.3
824,274 + -0.1
824,379 + GFF772 0.10 +0.5
824,379 + GFF772 0.10 +0.8
824,380 - GFF772 0.10 +0.4
824,380 - GFF772 0.10 -0.5
824,541 + GFF772 0.25 -0.6
824,541 + GFF772 0.25 +0.2
824,541 + GFF772 0.25 +0.4
824,541 + GFF772 0.25 +0.5
824,541 + GFF772 0.25 +0.2
824,542 - GFF772 0.25 -0.1
824,542 - GFF772 0.25 -0.9
824,542 - GFF772 0.25 -0.4
824,542 - GFF772 0.25 -0.9
824,542 - GFF772 0.25 +0.0
824,599 - GFF772 0.30 -0.4
824,599 - GFF772 0.30 -0.8
824,628 + GFF772 0.33 +0.5
824,629 - GFF772 0.33 -0.4
824,655 + GFF772 0.35 +0.8
824,655 + GFF772 0.35 -2.3
824,656 - GFF772 0.35 +0.1
824,656 - GFF772 0.35 -0.4
824,656 - GFF772 0.35 -0.9
824,656 - GFF772 0.35 +0.9
824,827 + GFF772 0.51 -0.6
824,828 - GFF772 0.51 +0.3
824,886 + GFF772 0.56 +0.1
824,887 - GFF772 0.56 +0.3
824,887 - GFF772 0.56 -1.9
825,054 + GFF772 0.71 +0.2
825,054 + GFF772 0.71 +0.5
825,054 + GFF772 0.71 -0.8
825,055 - GFF772 0.71 +0.2
825,055 - GFF772 0.71 -0.4
825,055 - GFF772 0.71 -0.1
825,055 - GFF772 0.71 -0.1

Or see this region's nucleotide sequence