Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF768 and GFF769 are separated by 10 nucleotides GFF769 and GFF770 overlap by 4 nucleotides GFF770 and GFF771 are separated by 20 nucleotides GFF771 and GFF772 are separated by 86 nucleotides
GFF768 - Nitrilotriacetate monooxygenase component A, at 820,726 to 822,057
GFF768
GFF769 - hypothetical protein, at 822,068 to 822,526
GFF769
GFF770 - Aliphatic sulfonates import ATP-binding protein SsuB, at 822,523 to 823,308
GFF770
GFF771 - Putative aliphatic sulfonates transport permease protein SsuC, at 823,329 to 824,180
GFF771
GFF772 - hypothetical protein, at 824,267 to 825,370
GFF772
Position (kb) 822
823
824 Strain fitness (log2 ratio) -2
-1
0
1 at 821.986 kb on + strand at 821.986 kb on + strand at 822.077 kb on - strand at 822.089 kb on + strand at 822.089 kb on + strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.090 kb on - strand at 822.213 kb on + strand, within GFF769 at 822.213 kb on + strand, within GFF769 at 822.214 kb on - strand, within GFF769 at 822.243 kb on + strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.244 kb on - strand, within GFF769 at 822.261 kb on + strand, within GFF769 at 822.262 kb on - strand, within GFF769 at 822.321 kb on + strand, within GFF769 at 822.322 kb on - strand, within GFF769 at 822.322 kb on - strand, within GFF769 at 822.381 kb on + strand, within GFF769 at 822.382 kb on - strand, within GFF769 at 822.393 kb on + strand, within GFF769 at 822.393 kb on + strand, within GFF769 at 822.394 kb on - strand, within GFF769 at 822.512 kb on + strand at 822.512 kb on + strand at 822.513 kb on - strand at 822.792 kb on + strand, within GFF770 at 823.118 kb on + strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.119 kb on - strand, within GFF770 at 823.262 kb on + strand at 823.262 kb on + strand at 823.262 kb on + strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.263 kb on - strand at 823.316 kb on - strand at 823.340 kb on - strand at 823.547 kb on - strand, within GFF771 at 823.643 kb on + strand, within GFF771 at 823.643 kb on + strand, within GFF771 at 823.644 kb on - strand, within GFF771 at 823.645 kb on + strand, within GFF771 at 823.646 kb on - strand, within GFF771 at 823.646 kb on - strand, within GFF771 at 823.646 kb on - strand, within GFF771 at 823.646 kb on - strand, within GFF771 at 823.882 kb on + strand, within GFF771 at 823.882 kb on + strand, within GFF771 at 823.883 kb on - strand, within GFF771 at 823.883 kb on - strand, within GFF771 at 824.014 kb on + strand, within GFF771 at 824.014 kb on + strand, within GFF771 at 824.014 kb on + strand, within GFF771 at 824.015 kb on - strand, within GFF771 at 824.015 kb on - strand, within GFF771 at 824.212 kb on + strand at 824.213 kb on - strand at 824.213 kb on - strand at 824.274 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 821,986 + +0.6 821,986 + -0.3 822,077 - +1.2 822,089 + -0.5 822,089 + -1.6 822,090 - +0.9 822,090 - +1.6 822,090 - -0.3 822,090 - -1.6 822,213 + GFF769 0.32 +0.3 822,213 + GFF769 0.32 +0.2 822,214 - GFF769 0.32 -0.2 822,243 + GFF769 0.38 +0.0 822,244 - GFF769 0.38 +0.6 822,244 - GFF769 0.38 +0.7 822,244 - GFF769 0.38 +0.3 822,261 + GFF769 0.42 +0.6 822,262 - GFF769 0.42 +0.1 822,321 + GFF769 0.55 +0.6 822,322 - GFF769 0.55 +0.7 822,322 - GFF769 0.55 +0.4 822,381 + GFF769 0.68 +0.1 822,382 - GFF769 0.68 +0.2 822,393 + GFF769 0.71 +1.2 822,393 + GFF769 0.71 +1.6 822,394 - GFF769 0.71 -0.6 822,512 + -0.4 822,512 + -1.0 822,513 - +0.9 822,792 + GFF770 0.34 -0.4 823,118 + GFF770 0.76 +1.2 823,119 - GFF770 0.76 +0.2 823,119 - GFF770 0.76 -0.0 823,119 - GFF770 0.76 -0.3 823,119 - GFF770 0.76 +0.0 823,119 - GFF770 0.76 -2.7 823,262 + -1.4 823,262 + +0.0 823,262 + +0.8 823,263 - +0.4 823,263 - -0.2 823,263 - -0.3 823,263 - +0.4 823,263 - -0.5 823,316 - -1.1 823,340 - +0.4 823,547 - GFF771 0.26 -0.8 823,643 + GFF771 0.37 +0.4 823,643 + GFF771 0.37 -0.9 823,644 - GFF771 0.37 +0.1 823,645 + GFF771 0.37 -0.1 823,646 - GFF771 0.37 +0.3 823,646 - GFF771 0.37 +0.0 823,646 - GFF771 0.37 +0.2 823,646 - GFF771 0.37 -0.4 823,882 + GFF771 0.65 -0.1 823,882 + GFF771 0.65 -0.3 823,883 - GFF771 0.65 +1.2 823,883 - GFF771 0.65 +0.2 824,014 + GFF771 0.80 -0.0 824,014 + GFF771 0.80 +0.0 824,014 + GFF771 0.80 +0.8 824,015 - GFF771 0.81 +0.8 824,015 - GFF771 0.81 -0.0 824,212 + -0.3 824,213 - +0.3 824,213 - +0.3 824,274 + -0.1
Or see this region's nucleotide sequence