Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF666 and GFF667 are separated by 169 nucleotides GFF667 and GFF668 are separated by 25 nucleotides
GFF666 - Alkyl hydroperoxide reductase C, at 716,660 to 717,223
GFF666
GFF667 - Alkyl hydroperoxide reductase subunit F, at 717,393 to 718,982
GFF667
GFF668 - Hydrogen peroxide-inducible genes activator, at 719,008 to 719,916
GFF668
Position (kb) 717
718
719 Strain fitness (log2 ratio) -1
0
1 at 716.524 kb on + strand at 716.525 kb on - strand at 716.832 kb on - strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.864 kb on + strand, within GFF666 at 716.896 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.939 kb on + strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 716.940 kb on - strand, within GFF666 at 717.128 kb on + strand, within GFF666 at 717.128 kb on + strand, within GFF666 at 717.231 kb on - strand at 717.429 kb on + strand at 717.430 kb on - strand at 717.762 kb on + strand, within GFF667 at 717.915 kb on + strand, within GFF667 at 717.916 kb on - strand, within GFF667 at 717.916 kb on - strand, within GFF667 at 718.081 kb on - strand, within GFF667 at 718.180 kb on - strand, within GFF667 at 718.230 kb on + strand, within GFF667 at 718.230 kb on + strand, within GFF667 at 718.231 kb on - strand, within GFF667 at 718.231 kb on - strand, within GFF667 at 718.414 kb on - strand, within GFF667 at 718.863 kb on + strand at 718.864 kb on - strand at 719.029 kb on + strand at 719.029 kb on + strand at 719.030 kb on - strand at 719.030 kb on - strand at 719.217 kb on + strand, within GFF668 at 719.217 kb on + strand, within GFF668 at 719.317 kb on + strand, within GFF668 at 719.318 kb on - strand, within GFF668 at 719.486 kb on + strand, within GFF668 at 719.486 kb on + strand, within GFF668 at 719.871 kb on + strand at 719.872 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 716,524 + +0.8 716,525 - -1.3 716,832 - GFF666 0.30 +0.3 716,864 + GFF666 0.36 -0.5 716,864 + GFF666 0.36 +0.4 716,864 + GFF666 0.36 -0.2 716,864 + GFF666 0.36 -0.9 716,864 + GFF666 0.36 -0.1 716,896 + GFF666 0.42 +0.1 716,939 + GFF666 0.49 -0.5 716,939 + GFF666 0.49 +0.2 716,939 + GFF666 0.49 -1.2 716,939 + GFF666 0.49 +0.8 716,940 - GFF666 0.50 -0.5 716,940 - GFF666 0.50 -0.5 716,940 - GFF666 0.50 +0.5 716,940 - GFF666 0.50 -0.1 717,128 + GFF666 0.83 -0.4 717,128 + GFF666 0.83 -0.7 717,231 - +0.7 717,429 + +0.0 717,430 - +0.1 717,762 + GFF667 0.23 -0.6 717,915 + GFF667 0.33 +0.8 717,916 - GFF667 0.33 -0.8 717,916 - GFF667 0.33 -0.5 718,081 - GFF667 0.43 -1.4 718,180 - GFF667 0.49 -0.2 718,230 + GFF667 0.53 +1.5 718,230 + GFF667 0.53 +1.4 718,231 - GFF667 0.53 +0.2 718,231 - GFF667 0.53 +0.6 718,414 - GFF667 0.64 +0.7 718,863 + -0.6 718,864 - +0.1 719,029 + +0.4 719,029 + -0.2 719,030 - +0.9 719,030 - +0.0 719,217 + GFF668 0.23 +0.3 719,217 + GFF668 0.23 -0.5 719,317 + GFF668 0.34 +0.6 719,318 - GFF668 0.34 +1.6 719,486 + GFF668 0.53 +0.6 719,486 + GFF668 0.53 +0.7 719,871 + -0.0 719,872 - +1.2
Or see this region's nucleotide sequence