Strain Fitness in Xanthobacter sp. DMC5 around GFF661

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF659 and GFF660 overlap by 4 nucleotidesGFF660 and GFF661 are separated by 52 nucleotidesGFF661 and GFF662 are separated by 271 nucleotides GFF659 - hypothetical protein, at 709,746 to 710,330 GFF659 GFF660 - hypothetical protein, at 710,327 to 710,911 GFF660 GFF661 - hypothetical protein, at 710,964 to 712,160 GFF661 GFF662 - hypothetical protein, at 712,432 to 714,321 GFF662 Position (kb) 710 711 712 713Strain fitness (log2 ratio) -2 -1 0 1 2at 710.048 kb on - strand, within GFF659at 710.059 kb on - strand, within GFF659at 710.059 kb on - strand, within GFF659at 710.169 kb on + strand, within GFF659at 710.170 kb on - strand, within GFF659at 710.170 kb on - strand, within GFF659at 710.170 kb on - strand, within GFF659at 710.456 kb on + strand, within GFF660at 710.457 kb on - strand, within GFF660at 710.457 kb on - strand, within GFF660at 710.564 kb on + strand, within GFF660at 710.564 kb on + strand, within GFF660at 710.565 kb on - strand, within GFF660at 710.565 kb on - strand, within GFF660at 710.909 kb on + strandat 710.910 kb on - strandat 710.948 kb on + strandat 710.949 kb on - strandat 711.046 kb on + strandat 711.063 kb on + strandat 711.063 kb on + strandat 711.064 kb on - strandat 711.093 kb on + strand, within GFF661at 711.318 kb on + strand, within GFF661at 711.319 kb on - strand, within GFF661at 711.319 kb on - strand, within GFF661at 711.372 kb on + strand, within GFF661at 711.373 kb on - strand, within GFF661at 711.399 kb on + strand, within GFF661at 711.400 kb on - strand, within GFF661at 711.474 kb on + strand, within GFF661at 711.474 kb on + strand, within GFF661at 711.474 kb on + strand, within GFF661at 711.475 kb on - strand, within GFF661at 711.680 kb on + strand, within GFF661at 711.681 kb on - strand, within GFF661at 711.689 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.717 kb on + strand, within GFF661at 711.718 kb on - strand, within GFF661at 711.799 kb on - strand, within GFF661at 711.841 kb on - strand, within GFF661at 711.861 kb on + strand, within GFF661at 711.862 kb on - strand, within GFF661at 711.936 kb on + strand, within GFF661at 711.936 kb on + strand, within GFF661at 711.936 kb on + strand, within GFF661at 712.005 kb on + strand, within GFF661at 712.006 kb on - strand, within GFF661at 712.041 kb on + strandat 712.041 kb on + strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.042 kb on - strandat 712.043 kb on + strandat 712.113 kb on + strandat 712.114 kb on - strandat 712.342 kb on + strandat 712.357 kb on - strandat 712.440 kb on + strandat 712.443 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.558 kb on + strandat 712.559 kb on - strandat 712.573 kb on + strandat 712.573 kb on + strandat 712.582 kb on + strandat 712.582 kb on + strandat 712.699 kb on + strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.700 kb on - strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.858 kb on + strand, within GFF662at 712.859 kb on - strand, within GFF662at 712.859 kb on - strand, within GFF662at 712.859 kb on - strand, within GFF662

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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710,048 - GFF659 0.52 +0.1
710,059 - GFF659 0.54 +0.7
710,059 - GFF659 0.54 -0.3
710,169 + GFF659 0.72 -0.4
710,170 - GFF659 0.72 -0.4
710,170 - GFF659 0.72 +0.3
710,170 - GFF659 0.72 -0.2
710,456 + GFF660 0.22 +0.5
710,457 - GFF660 0.22 -0.1
710,457 - GFF660 0.22 +2.0
710,564 + GFF660 0.41 +1.1
710,564 + GFF660 0.41 +0.9
710,565 - GFF660 0.41 -0.5
710,565 - GFF660 0.41 +1.1
710,909 + +0.8
710,910 - +0.3
710,948 + +1.1
710,949 - -1.5
711,046 + -0.6
711,063 + -0.1
711,063 + -0.3
711,064 - +1.1
711,093 + GFF661 0.11 +0.6
711,318 + GFF661 0.30 -0.8
711,319 - GFF661 0.30 -0.5
711,319 - GFF661 0.30 -0.2
711,372 + GFF661 0.34 +0.2
711,373 - GFF661 0.34 +0.1
711,399 + GFF661 0.36 -0.1
711,400 - GFF661 0.36 -0.5
711,474 + GFF661 0.43 -1.0
711,474 + GFF661 0.43 +0.5
711,474 + GFF661 0.43 +1.3
711,475 - GFF661 0.43 -1.0
711,680 + GFF661 0.60 +0.8
711,681 - GFF661 0.60 +0.3
711,689 + GFF661 0.61 +1.6
711,717 + GFF661 0.63 -1.6
711,717 + GFF661 0.63 -1.8
711,717 + GFF661 0.63 -0.5
711,718 - GFF661 0.63 -0.4
711,799 - GFF661 0.70 -0.6
711,841 - GFF661 0.73 -0.9
711,861 + GFF661 0.75 +0.1
711,862 - GFF661 0.75 +0.6
711,936 + GFF661 0.81 -0.4
711,936 + GFF661 0.81 -0.1
711,936 + GFF661 0.81 +0.4
712,005 + GFF661 0.87 +1.8
712,006 - GFF661 0.87 -1.7
712,041 + -0.1
712,041 + +1.0
712,042 - -0.2
712,042 - +0.0
712,042 - +1.2
712,042 - +0.6
712,043 + -0.0
712,113 + -0.3
712,114 - +0.3
712,342 + +1.1
712,357 - +1.1
712,440 + +0.4
712,443 + +0.3
712,558 + -0.0
712,558 + +0.5
712,558 + -0.4
712,558 + +0.9
712,559 - -0.1
712,573 + -0.3
712,573 + -0.5
712,582 + -0.8
712,582 + +0.3
712,699 + GFF662 0.14 +0.9
712,700 - GFF662 0.14 +0.7
712,700 - GFF662 0.14 +0.2
712,700 - GFF662 0.14 -0.1
712,858 + GFF662 0.23 +0.2
712,858 + GFF662 0.23 +0.3
712,858 + GFF662 0.23 +0.7
712,858 + GFF662 0.23 +0.1
712,858 + GFF662 0.23 +0.5
712,859 - GFF662 0.23 -0.2
712,859 - GFF662 0.23 -0.4
712,859 - GFF662 0.23 -0.9

Or see this region's nucleotide sequence