Strain Fitness in Xanthobacter sp. DMC5 around GFF59

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF58 and GFF59 are separated by 68 nucleotidesGFF59 and GFF60 are separated by 42 nucleotides GFF58 - Oxygen-dependent coproporphyrinogen-III oxidase, at 67,923 to 68,870 GFF58 GFF59 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 68,939 to 69,403 GFF59 GFF60 - Glucan endo-1,3-beta-glucosidase, at 69,446 to 70,657 GFF60 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 68.913 kb on - strandat 69.247 kb on + strand, within GFF59at 69.248 kb on - strand, within GFF59at 69.249 kb on + strand, within GFF59at 69.249 kb on + strand, within GFF59at 69.249 kb on + strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.250 kb on - strand, within GFF59at 69.311 kb on - strand, within GFF59at 69.311 kb on - strand, within GFF59at 69.311 kb on - strand, within GFF59at 69.382 kb on - strandat 69.382 kb on - strandat 69.478 kb on - strandat 69.570 kb on + strand, within GFF60at 69.571 kb on - strand, within GFF60at 69.571 kb on - strand, within GFF60at 69.571 kb on - strand, within GFF60at 69.571 kb on - strand, within GFF60at 69.612 kb on + strand, within GFF60at 69.793 kb on + strand, within GFF60at 69.793 kb on + strand, within GFF60at 69.847 kb on + strand, within GFF60at 69.865 kb on - strand, within GFF60at 69.865 kb on - strand, within GFF60at 69.924 kb on + strand, within GFF60at 69.925 kb on - strand, within GFF60at 69.948 kb on + strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.949 kb on - strand, within GFF60at 69.961 kb on - strand, within GFF60at 69.979 kb on - strand, within GFF60at 70.222 kb on + strand, within GFF60at 70.222 kb on + strand, within GFF60at 70.222 kb on + strand, within GFF60at 70.223 kb on - strand, within GFF60at 70.360 kb on - strand, within GFF60at 70.398 kb on + strand, within GFF60

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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68,913 - +0.5
69,247 + GFF59 0.66 +0.2
69,248 - GFF59 0.66 +0.6
69,249 + GFF59 0.67 -1.5
69,249 + GFF59 0.67 +0.6
69,249 + GFF59 0.67 +0.2
69,250 - GFF59 0.67 -1.0
69,250 - GFF59 0.67 +0.8
69,250 - GFF59 0.67 +0.3
69,250 - GFF59 0.67 +0.8
69,250 - GFF59 0.67 -0.1
69,250 - GFF59 0.67 -0.3
69,250 - GFF59 0.67 +0.2
69,311 - GFF59 0.80 +0.7
69,311 - GFF59 0.80 +0.0
69,311 - GFF59 0.80 -0.4
69,382 - -1.8
69,382 - +1.2
69,478 - +1.0
69,570 + GFF60 0.10 -0.1
69,571 - GFF60 0.10 +0.0
69,571 - GFF60 0.10 -1.2
69,571 - GFF60 0.10 -0.3
69,571 - GFF60 0.10 -0.4
69,612 + GFF60 0.14 +0.1
69,793 + GFF60 0.29 -0.4
69,793 + GFF60 0.29 -0.2
69,847 + GFF60 0.33 +0.4
69,865 - GFF60 0.35 +0.1
69,865 - GFF60 0.35 -0.9
69,924 + GFF60 0.39 +0.8
69,925 - GFF60 0.40 -1.0
69,948 + GFF60 0.41 -0.4
69,949 - GFF60 0.42 +0.2
69,949 - GFF60 0.42 +0.4
69,949 - GFF60 0.42 +0.4
69,949 - GFF60 0.42 -0.7
69,949 - GFF60 0.42 +0.7
69,949 - GFF60 0.42 -0.8
69,961 - GFF60 0.42 +1.0
69,979 - GFF60 0.44 +1.1
70,222 + GFF60 0.64 -0.4
70,222 + GFF60 0.64 -0.3
70,222 + GFF60 0.64 -0.9
70,223 - GFF60 0.64 +0.6
70,360 - GFF60 0.75 +0.2
70,398 + GFF60 0.79 -0.6

Or see this region's nucleotide sequence