Strain Fitness in Xanthobacter sp. DMC5 around GFF514

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF513 and GFF514 are separated by 213 nucleotidesGFF514 and GFF515 are separated by 35 nucleotidesGFF515 and GFF516 are separated by 101 nucleotides GFF513 - hypothetical protein, at 545,801 to 547,882 GFF513 GFF514 - hypothetical protein, at 548,096 to 550,147 GFF514 GFF515 - hypothetical protein, at 550,183 to 550,494 GFF515 GFF516 - 3-methylmercaptopropionyl-CoA dehydrogenase, at 550,596 to 552,386 GFF516 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -2 -1 0 1 2at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.100 kb on + strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.101 kb on - strand, within GFF513at 547.402 kb on + strand, within GFF513at 547.403 kb on - strand, within GFF513at 547.742 kb on + strandat 547.742 kb on + strandat 547.742 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 547.880 kb on + strandat 548.160 kb on + strandat 548.160 kb on + strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.161 kb on - strandat 548.185 kb on + strandat 548.294 kb on + strandat 548.397 kb on - strand, within GFF514at 548.397 kb on - strand, within GFF514at 548.518 kb on - strand, within GFF514at 548.531 kb on + strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.532 kb on - strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.624 kb on + strand, within GFF514at 548.625 kb on - strand, within GFF514at 548.630 kb on + strand, within GFF514at 548.802 kb on + strand, within GFF514at 548.811 kb on - strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.942 kb on + strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.943 kb on - strand, within GFF514at 548.960 kb on + strand, within GFF514at 548.969 kb on + strand, within GFF514at 548.970 kb on - strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.029 kb on + strand, within GFF514at 549.030 kb on - strand, within GFF514at 549.030 kb on - strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.089 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.377 kb on + strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.378 kb on - strand, within GFF514at 549.775 kb on - strand, within GFF514at 549.775 kb on - strand, within GFF514at 549.795 kb on + strand, within GFF514at 549.852 kb on + strand, within GFF514at 549.897 kb on + strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 549.898 kb on - strand, within GFF514at 550.010 kb on - strandat 550.023 kb on - strandat 550.023 kb on - strandat 550.023 kb on - strandat 550.427 kb on + strand, within GFF515at 550.428 kb on - strand, within GFF515at 550.428 kb on - strand, within GFF515at 550.789 kb on + strand, within GFF516at 550.789 kb on + strand, within GFF516at 550.789 kb on + strand, within GFF516at 550.790 kb on - strand, within GFF516at 550.790 kb on - strand, within GFF516at 550.822 kb on + strand, within GFF516at 550.822 kb on + strand, within GFF516at 550.825 kb on + strand, within GFF516at 550.969 kb on + strand, within GFF516at 550.969 kb on + strand, within GFF516at 550.970 kb on - strand, within GFF516at 550.970 kb on - strand, within GFF516at 551.072 kb on - strand, within GFF516at 551.072 kb on - strand, within GFF516at 551.101 kb on + strand, within GFF516at 551.101 kb on + strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.102 kb on - strand, within GFF516at 551.129 kb on - strand, within GFF516at 551.144 kb on - strand, within GFF516

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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547,100 + GFF513 0.62 -0.2
547,100 + GFF513 0.62 -0.0
547,100 + GFF513 0.62 -0.9
547,100 + GFF513 0.62 +0.4
547,101 - GFF513 0.62 -0.7
547,101 - GFF513 0.62 -0.2
547,101 - GFF513 0.62 -0.5
547,402 + GFF513 0.77 +0.9
547,403 - GFF513 0.77 +1.0
547,742 + -0.5
547,742 + -0.2
547,742 + +0.0
547,880 + -0.5
547,880 + +0.2
547,880 + -0.1
547,880 + +0.7
547,880 + -1.5
548,160 + -0.0
548,160 + -0.2
548,161 - +0.6
548,161 - +1.1
548,161 - +0.8
548,161 - +0.2
548,185 + -2.0
548,294 + -0.2
548,397 - GFF514 0.15 -0.9
548,397 - GFF514 0.15 -0.2
548,518 - GFF514 0.21 -0.1
548,531 + GFF514 0.21 +0.1
548,532 - GFF514 0.21 +0.2
548,532 - GFF514 0.21 +0.6
548,532 - GFF514 0.21 +0.5
548,532 - GFF514 0.21 -0.5
548,624 + GFF514 0.26 +0.7
548,624 + GFF514 0.26 -0.2
548,625 - GFF514 0.26 +0.6
548,630 + GFF514 0.26 -0.6
548,802 + GFF514 0.34 +0.1
548,811 - GFF514 0.35 +0.6
548,942 + GFF514 0.41 +1.5
548,942 + GFF514 0.41 +0.1
548,942 + GFF514 0.41 -0.1
548,943 - GFF514 0.41 +0.2
548,943 - GFF514 0.41 +0.7
548,943 - GFF514 0.41 +0.4
548,960 + GFF514 0.42 -0.6
548,969 + GFF514 0.43 +0.4
548,970 - GFF514 0.43 -0.4
549,029 + GFF514 0.45 +0.6
549,029 + GFF514 0.45 +1.0
549,029 + GFF514 0.45 +1.8
549,030 - GFF514 0.46 +0.6
549,030 - GFF514 0.46 -0.4
549,089 + GFF514 0.48 +0.1
549,089 + GFF514 0.48 +0.5
549,089 + GFF514 0.48 +0.0
549,377 + GFF514 0.62 +0.8
549,377 + GFF514 0.62 +1.0
549,377 + GFF514 0.62 +0.2
549,377 + GFF514 0.62 +0.6
549,377 + GFF514 0.62 +0.2
549,377 + GFF514 0.62 +0.5
549,378 - GFF514 0.62 +1.2
549,378 - GFF514 0.62 -0.2
549,378 - GFF514 0.62 -0.4
549,775 - GFF514 0.82 +0.1
549,775 - GFF514 0.82 +0.2
549,795 + GFF514 0.83 +0.5
549,852 + GFF514 0.86 -0.1
549,897 + GFF514 0.88 -0.1
549,898 - GFF514 0.88 -0.0
549,898 - GFF514 0.88 -0.1
549,898 - GFF514 0.88 +0.4
549,898 - GFF514 0.88 -0.4
550,010 - -0.0
550,023 - +1.2
550,023 - +0.6
550,023 - +0.3
550,427 + GFF515 0.78 -0.3
550,428 - GFF515 0.79 -0.4
550,428 - GFF515 0.79 -0.5
550,789 + GFF516 0.11 -0.2
550,789 + GFF516 0.11 +0.9
550,789 + GFF516 0.11 -0.2
550,790 - GFF516 0.11 +1.4
550,790 - GFF516 0.11 +0.6
550,822 + GFF516 0.13 -0.0
550,822 + GFF516 0.13 +0.6
550,825 + GFF516 0.13 -0.9
550,969 + GFF516 0.21 -0.1
550,969 + GFF516 0.21 +1.8
550,970 - GFF516 0.21 +0.6
550,970 - GFF516 0.21 +0.1
551,072 - GFF516 0.27 -0.1
551,072 - GFF516 0.27 -0.5
551,101 + GFF516 0.28 +1.5
551,101 + GFF516 0.28 -1.8
551,102 - GFF516 0.28 +0.9
551,102 - GFF516 0.28 +0.2
551,102 - GFF516 0.28 -1.0
551,129 - GFF516 0.30 +1.5
551,144 - GFF516 0.31 -0.0

Or see this region's nucleotide sequence