Strain Fitness in Xanthobacter sp. DMC5 around GFF4922

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4921 and GFF4922 are separated by 90 nucleotidesGFF4922 and GFF4923 are separated by 174 nucleotides GFF4921 - hypothetical protein, at 27,386 to 28,423 GFF4921 GFF4922 - hypothetical protein, at 28,514 to 30,577 GFF4922 GFF4923 - hypothetical protein, at 30,752 to 31,948 GFF4923 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -2 -1 0 1at 27.600 kb on + strand, within GFF4921at 27.600 kb on + strand, within GFF4921at 27.601 kb on - strand, within GFF4921at 27.601 kb on - strand, within GFF4921at 27.601 kb on - strand, within GFF4921at 27.930 kb on + strand, within GFF4921at 27.930 kb on + strand, within GFF4921at 27.931 kb on - strand, within GFF4921at 27.931 kb on - strand, within GFF4921at 27.933 kb on + strand, within GFF4921at 27.934 kb on - strand, within GFF4921at 27.934 kb on - strand, within GFF4921at 27.934 kb on - strand, within GFF4921at 27.934 kb on - strand, within GFF4921at 27.999 kb on + strand, within GFF4921at 27.999 kb on + strand, within GFF4921at 27.999 kb on + strand, within GFF4921at 28.007 kb on + strand, within GFF4921at 28.281 kb on - strand, within GFF4921at 28.326 kb on + strandat 28.356 kb on + strandat 28.356 kb on + strandat 28.356 kb on + strandat 28.515 kb on + strandat 28.558 kb on + strandat 28.979 kb on + strand, within GFF4922at 28.979 kb on + strand, within GFF4922at 28.979 kb on + strand, within GFF4922at 28.979 kb on + strand, within GFF4922at 28.980 kb on - strand, within GFF4922at 28.980 kb on - strand, within GFF4922at 29.128 kb on + strand, within GFF4922at 29.129 kb on - strand, within GFF4922at 29.139 kb on + strand, within GFF4922at 29.145 kb on + strand, within GFF4922at 29.145 kb on + strand, within GFF4922at 29.146 kb on - strand, within GFF4922at 29.190 kb on - strand, within GFF4922at 29.190 kb on - strand, within GFF4922at 29.190 kb on - strand, within GFF4922at 29.256 kb on - strand, within GFF4922at 29.421 kb on + strand, within GFF4922at 29.421 kb on + strand, within GFF4922at 29.421 kb on + strand, within GFF4922at 29.613 kb on + strand, within GFF4922at 29.613 kb on + strand, within GFF4922at 29.614 kb on - strand, within GFF4922at 29.614 kb on - strand, within GFF4922at 29.695 kb on - strand, within GFF4922at 29.695 kb on - strand, within GFF4922at 29.695 kb on - strand, within GFF4922at 29.706 kb on + strand, within GFF4922at 29.877 kb on + strand, within GFF4922at 29.971 kb on - strand, within GFF4922at 29.971 kb on - strand, within GFF4922at 29.971 kb on - strand, within GFF4922at 29.971 kb on - strand, within GFF4922at 30.069 kb on + strand, within GFF4922at 30.069 kb on + strand, within GFF4922at 30.069 kb on + strand, within GFF4922at 30.069 kb on + strand, within GFF4922at 30.070 kb on - strand, within GFF4922at 30.070 kb on - strand, within GFF4922at 30.070 kb on - strand, within GFF4922at 30.070 kb on - strand, within GFF4922at 30.070 kb on - strand, within GFF4922at 30.283 kb on + strand, within GFF4922at 30.283 kb on + strand, within GFF4922at 30.284 kb on - strand, within GFF4922at 30.284 kb on - strand, within GFF4922at 30.372 kb on + strandat 30.373 kb on - strandat 30.373 kb on - strandat 30.583 kb on - strandat 30.583 kb on - strandat 30.970 kb on + strand, within GFF4923at 30.971 kb on - strand, within GFF4923at 31.164 kb on + strand, within GFF4923at 31.165 kb on - strand, within GFF4923at 31.165 kb on - strand, within GFF4923at 31.165 kb on - strand, within GFF4923at 31.165 kb on - strand, within GFF4923at 31.215 kb on + strand, within GFF4923at 31.215 kb on + strand, within GFF4923at 31.215 kb on + strand, within GFF4923at 31.216 kb on - strand, within GFF4923at 31.320 kb on + strand, within GFF4923at 31.321 kb on - strand, within GFF4923at 31.321 kb on - strand, within GFF4923at 31.330 kb on + strand, within GFF4923at 31.330 kb on + strand, within GFF4923at 31.331 kb on - strand, within GFF4923at 31.331 kb on - strand, within GFF4923at 31.331 kb on - strand, within GFF4923at 31.331 kb on - strand, within GFF4923at 31.362 kb on + strand, within GFF4923at 31.362 kb on + strand, within GFF4923at 31.362 kb on + strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.363 kb on - strand, within GFF4923at 31.464 kb on + strand, within GFF4923at 31.464 kb on + strand, within GFF4923at 31.464 kb on + strand, within GFF4923at 31.464 kb on + strand, within GFF4923at 31.465 kb on - strand, within GFF4923at 31.476 kb on + strand, within GFF4923at 31.576 kb on + strand, within GFF4923at 31.576 kb on + strand, within GFF4923at 31.576 kb on + strand, within GFF4923at 31.576 kb on + strand, within GFF4923at 31.576 kb on + strand, within GFF4923at 31.577 kb on - strand, within GFF4923at 31.577 kb on - strand, within GFF4923at 31.577 kb on - strand, within GFF4923at 31.577 kb on - strand, within GFF4923

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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27,600 + GFF4921 0.21 -0.9
27,600 + GFF4921 0.21 +0.1
27,601 - GFF4921 0.21 -0.0
27,601 - GFF4921 0.21 -0.1
27,601 - GFF4921 0.21 +0.2
27,930 + GFF4921 0.52 +0.3
27,930 + GFF4921 0.52 +1.0
27,931 - GFF4921 0.53 -0.0
27,931 - GFF4921 0.53 +0.3
27,933 + GFF4921 0.53 +0.2
27,934 - GFF4921 0.53 +0.2
27,934 - GFF4921 0.53 -0.1
27,934 - GFF4921 0.53 +1.4
27,934 - GFF4921 0.53 +1.4
27,999 + GFF4921 0.59 -0.2
27,999 + GFF4921 0.59 +1.4
27,999 + GFF4921 0.59 -0.2
28,007 + GFF4921 0.60 -0.1
28,281 - GFF4921 0.86 -0.7
28,326 + +0.2
28,356 + -0.6
28,356 + -2.2
28,356 + +0.0
28,515 + -0.0
28,558 + +1.2
28,979 + GFF4922 0.23 -0.6
28,979 + GFF4922 0.23 -1.4
28,979 + GFF4922 0.23 -1.0
28,979 + GFF4922 0.23 +0.4
28,980 - GFF4922 0.23 +0.0
28,980 - GFF4922 0.23 -1.0
29,128 + GFF4922 0.30 +1.7
29,129 - GFF4922 0.30 -0.4
29,139 + GFF4922 0.30 +0.3
29,145 + GFF4922 0.31 -0.0
29,145 + GFF4922 0.31 -0.0
29,146 - GFF4922 0.31 +1.1
29,190 - GFF4922 0.33 -0.3
29,190 - GFF4922 0.33 -0.2
29,190 - GFF4922 0.33 -0.3
29,256 - GFF4922 0.36 -0.2
29,421 + GFF4922 0.44 -1.1
29,421 + GFF4922 0.44 +0.1
29,421 + GFF4922 0.44 +0.1
29,613 + GFF4922 0.53 +0.1
29,613 + GFF4922 0.53 +0.6
29,614 - GFF4922 0.53 +0.8
29,614 - GFF4922 0.53 -0.4
29,695 - GFF4922 0.57 +0.1
29,695 - GFF4922 0.57 +0.4
29,695 - GFF4922 0.57 +0.1
29,706 + GFF4922 0.58 -0.1
29,877 + GFF4922 0.66 +0.3
29,971 - GFF4922 0.71 -1.4
29,971 - GFF4922 0.71 +0.0
29,971 - GFF4922 0.71 +0.6
29,971 - GFF4922 0.71 -0.1
30,069 + GFF4922 0.75 -0.4
30,069 + GFF4922 0.75 -1.3
30,069 + GFF4922 0.75 -0.0
30,069 + GFF4922 0.75 +0.0
30,070 - GFF4922 0.75 +0.3
30,070 - GFF4922 0.75 -1.1
30,070 - GFF4922 0.75 +1.0
30,070 - GFF4922 0.75 +0.3
30,070 - GFF4922 0.75 +0.6
30,283 + GFF4922 0.86 +0.8
30,283 + GFF4922 0.86 +0.1
30,284 - GFF4922 0.86 +0.3
30,284 - GFF4922 0.86 -0.1
30,372 + +0.6
30,373 - +0.5
30,373 - -0.3
30,583 - -0.4
30,583 - -1.0
30,970 + GFF4923 0.18 +0.3
30,971 - GFF4923 0.18 +1.0
31,164 + GFF4923 0.34 -0.0
31,165 - GFF4923 0.35 -1.5
31,165 - GFF4923 0.35 +0.0
31,165 - GFF4923 0.35 +1.0
31,165 - GFF4923 0.35 -0.0
31,215 + GFF4923 0.39 -0.6
31,215 + GFF4923 0.39 -0.3
31,215 + GFF4923 0.39 +0.2
31,216 - GFF4923 0.39 -0.9
31,320 + GFF4923 0.47 +0.4
31,321 - GFF4923 0.48 -2.1
31,321 - GFF4923 0.48 +0.4
31,330 + GFF4923 0.48 -0.3
31,330 + GFF4923 0.48 -0.2
31,331 - GFF4923 0.48 -0.6
31,331 - GFF4923 0.48 +0.3
31,331 - GFF4923 0.48 +0.6
31,331 - GFF4923 0.48 +0.5
31,362 + GFF4923 0.51 +1.0
31,362 + GFF4923 0.51 -0.8
31,362 + GFF4923 0.51 -0.8
31,363 - GFF4923 0.51 +0.3
31,363 - GFF4923 0.51 -0.8
31,363 - GFF4923 0.51 +0.5
31,363 - GFF4923 0.51 -0.5
31,363 - GFF4923 0.51 +0.1
31,363 - GFF4923 0.51 -0.4
31,464 + GFF4923 0.59 +0.6
31,464 + GFF4923 0.59 -0.6
31,464 + GFF4923 0.59 -0.5
31,464 + GFF4923 0.59 +0.2
31,465 - GFF4923 0.60 -0.5
31,476 + GFF4923 0.60 +0.7
31,576 + GFF4923 0.69 -1.4
31,576 + GFF4923 0.69 +1.2
31,576 + GFF4923 0.69 -0.2
31,576 + GFF4923 0.69 -0.3
31,576 + GFF4923 0.69 -0.5
31,577 - GFF4923 0.69 -0.6
31,577 - GFF4923 0.69 -0.7
31,577 - GFF4923 0.69 -0.2
31,577 - GFF4923 0.69 +0.6

Or see this region's nucleotide sequence