Strain Fitness in Xanthobacter sp. DMC5 around GFF4898

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4896 and GFF4897 are separated by 120 nucleotidesGFF4897 and GFF4898 are separated by 16 nucleotidesGFF4898 and GFF4899 are separated by 126 nucleotidesGFF4899 and GFF4900 overlap by 4 nucleotides GFF4896 - Protein ChrB, at 335 to 1,327 GFF4896 GFF4897 - Protein ChrB, at 1,448 to 1,894 GFF4897 GFF4898 - hypothetical protein, at 1,911 to 3,143 GFF4898 GFF4899 - Transcriptional regulator, at 3,270 to 3,596 GFF4899 GFF4900 - putative chromate transport protein, at 3,593 to 4,846 GFF4900 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.026 kb on + strand, within GFF4896at 1.026 kb on + strand, within GFF4896at 1.026 kb on + strand, within GFF4896at 1.027 kb on - strand, within GFF4896at 1.027 kb on - strand, within GFF4896at 1.188 kb on + strand, within GFF4896at 1.189 kb on - strand, within GFF4896at 1.242 kb on + strandat 1.254 kb on + strandat 1.389 kb on - strandat 1.389 kb on - strandat 1.664 kb on + strand, within GFF4897at 1.664 kb on + strand, within GFF4897at 1.665 kb on - strand, within GFF4897at 1.835 kb on + strand, within GFF4897at 1.836 kb on - strand, within GFF4897at 1.836 kb on - strand, within GFF4897at 1.848 kb on - strand, within GFF4897at 1.878 kb on - strandat 1.977 kb on + strandat 1.978 kb on - strandat 2.038 kb on - strand, within GFF4898at 2.223 kb on + strand, within GFF4898at 2.223 kb on + strand, within GFF4898at 2.361 kb on + strand, within GFF4898at 2.478 kb on + strand, within GFF4898at 2.511 kb on + strand, within GFF4898at 2.511 kb on + strand, within GFF4898at 2.519 kb on + strand, within GFF4898at 2.520 kb on - strand, within GFF4898at 2.520 kb on - strand, within GFF4898at 2.520 kb on - strand, within GFF4898at 2.589 kb on + strand, within GFF4898at 2.842 kb on + strand, within GFF4898at 2.920 kb on - strand, within GFF4898at 3.042 kb on + strandat 3.042 kb on + strandat 3.043 kb on - strandat 3.088 kb on - strandat 3.088 kb on - strandat 3.342 kb on + strand, within GFF4899at 3.343 kb on - strand, within GFF4899at 3.343 kb on - strand, within GFF4899at 3.343 kb on - strand, within GFF4899at 3.438 kb on + strand, within GFF4899at 3.439 kb on - strand, within GFF4899at 3.439 kb on - strand, within GFF4899at 3.473 kb on - strand, within GFF4899at 3.486 kb on + strand, within GFF4899at 3.487 kb on - strand, within GFF4899at 3.556 kb on - strand, within GFF4899at 3.722 kb on + strand, within GFF4900at 3.773 kb on + strand, within GFF4900at 3.895 kb on + strand, within GFF4900at 4.042 kb on + strand, within GFF4900

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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1,026 + GFF4896 0.70 +0.5
1,026 + GFF4896 0.70 +0.5
1,026 + GFF4896 0.70 +1.0
1,027 - GFF4896 0.70 +0.1
1,027 - GFF4896 0.70 +0.7
1,188 + GFF4896 0.86 -0.9
1,189 - GFF4896 0.86 -0.8
1,242 + -0.0
1,254 + -0.5
1,389 - +0.1
1,389 - +0.4
1,664 + GFF4897 0.48 +0.6
1,664 + GFF4897 0.48 -0.6
1,665 - GFF4897 0.49 -0.0
1,835 + GFF4897 0.87 +0.1
1,836 - GFF4897 0.87 +0.1
1,836 - GFF4897 0.87 -0.6
1,848 - GFF4897 0.89 -0.6
1,878 - +0.3
1,977 + +0.7
1,978 - +0.4
2,038 - GFF4898 0.10 +0.2
2,223 + GFF4898 0.25 -2.0
2,223 + GFF4898 0.25 -0.9
2,361 + GFF4898 0.36 +2.0
2,478 + GFF4898 0.46 +0.2
2,511 + GFF4898 0.49 +0.8
2,511 + GFF4898 0.49 +0.5
2,519 + GFF4898 0.49 +0.6
2,520 - GFF4898 0.49 +0.1
2,520 - GFF4898 0.49 +0.7
2,520 - GFF4898 0.49 +0.4
2,589 + GFF4898 0.55 +0.5
2,842 + GFF4898 0.76 +2.8
2,920 - GFF4898 0.82 +0.2
3,042 + -0.2
3,042 + +0.3
3,043 - +1.3
3,088 - +0.0
3,088 - -0.5
3,342 + GFF4899 0.22 -0.1
3,343 - GFF4899 0.22 -0.0
3,343 - GFF4899 0.22 -1.1
3,343 - GFF4899 0.22 +0.3
3,438 + GFF4899 0.51 -1.5
3,439 - GFF4899 0.52 +0.7
3,439 - GFF4899 0.52 -0.6
3,473 - GFF4899 0.62 +0.7
3,486 + GFF4899 0.66 -1.1
3,487 - GFF4899 0.66 -0.1
3,556 - GFF4899 0.87 +0.8
3,722 + GFF4900 0.10 -0.4
3,773 + GFF4900 0.14 -0.4
3,895 + GFF4900 0.24 +0.1
4,042 + GFF4900 0.36 -1.1

Or see this region's nucleotide sequence