Strain Fitness in Xanthobacter sp. DMC5 around GFF4893

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4892 and GFF4893 are separated by 22 nucleotidesGFF4893 and GFF4894 are separated by 59 nucleotides GFF4892 - hypothetical protein, at 34,262 to 35,569 GFF4892 GFF4893 - Caffeyl-CoA reductase-Etf complex subunit CarE, at 35,592 to 36,701 GFF4893 GFF4894 - Caffeyl-CoA reductase-Etf complex subunit CarD, at 36,761 to 37,609 GFF4894 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1 2 3at 34.639 kb on + strand, within GFF4892at 34.640 kb on - strand, within GFF4892at 34.683 kb on + strand, within GFF4892at 34.683 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.734 kb on + strand, within GFF4892at 34.735 kb on - strand, within GFF4892at 34.735 kb on - strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.804 kb on + strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.805 kb on - strand, within GFF4892at 34.806 kb on + strand, within GFF4892at 34.881 kb on + strand, within GFF4892at 34.882 kb on - strand, within GFF4892at 35.001 kb on + strand, within GFF4892at 35.154 kb on + strand, within GFF4892at 35.154 kb on + strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.155 kb on - strand, within GFF4892at 35.262 kb on + strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.263 kb on - strand, within GFF4892at 35.506 kb on - strandat 35.506 kb on - strandat 35.506 kb on - strandat 35.554 kb on - strandat 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.803 kb on + strand, within GFF4893at 35.804 kb on - strand, within GFF4893at 35.893 kb on + strand, within GFF4893at 35.893 kb on + strand, within GFF4893at 35.894 kb on - strand, within GFF4893at 36.002 kb on + strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.158 kb on - strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.169 kb on + strand, within GFF4893at 36.170 kb on - strand, within GFF4893at 36.170 kb on - strand, within GFF4893at 36.346 kb on + strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.347 kb on - strand, within GFF4893at 36.379 kb on + strand, within GFF4893at 36.395 kb on - strand, within GFF4893at 36.425 kb on - strand, within GFF4893at 36.442 kb on + strand, within GFF4893at 36.443 kb on - strand, within GFF4893at 36.616 kb on + strandat 36.617 kb on - strandat 36.716 kb on + strandat 36.716 kb on + strandat 36.717 kb on - strandat 37.170 kb on + strand, within GFF4894at 37.170 kb on + strand, within GFF4894at 37.170 kb on + strand, within GFF4894at 37.170 kb on + strand, within GFF4894at 37.171 kb on - strand, within GFF4894at 37.171 kb on - strand, within GFF4894at 37.500 kb on + strand, within GFF4894at 37.500 kb on + strand, within GFF4894at 37.501 kb on - strand, within GFF4894at 37.501 kb on - strand, within GFF4894at 37.501 kb on - strand, within GFF4894at 37.652 kb on + strandat 37.652 kb on + strandat 37.652 kb on + strandat 37.653 kb on - strandat 37.653 kb on - strandat 37.653 kb on - strandat 37.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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34,639 + GFF4892 0.29 +0.5
34,640 - GFF4892 0.29 -0.1
34,683 + GFF4892 0.32 -1.5
34,683 + GFF4892 0.32 -1.0
34,734 + GFF4892 0.36 -0.6
34,734 + GFF4892 0.36 +0.4
34,734 + GFF4892 0.36 +0.3
34,734 + GFF4892 0.36 +0.7
34,735 - GFF4892 0.36 +1.3
34,735 - GFF4892 0.36 +2.0
34,804 + GFF4892 0.41 +0.8
34,804 + GFF4892 0.41 +0.1
34,804 + GFF4892 0.41 -0.2
34,804 + GFF4892 0.41 +0.6
34,804 + GFF4892 0.41 +0.0
34,804 + GFF4892 0.41 -0.0
34,804 + GFF4892 0.41 -0.6
34,804 + GFF4892 0.41 -0.1
34,804 + GFF4892 0.41 -0.4
34,804 + GFF4892 0.41 +0.8
34,805 - GFF4892 0.42 -1.2
34,805 - GFF4892 0.42 -0.4
34,805 - GFF4892 0.42 +0.0
34,805 - GFF4892 0.42 +0.4
34,805 - GFF4892 0.42 -0.9
34,805 - GFF4892 0.42 -1.6
34,805 - GFF4892 0.42 +0.7
34,805 - GFF4892 0.42 +0.1
34,806 + GFF4892 0.42 -1.2
34,881 + GFF4892 0.47 +1.6
34,882 - GFF4892 0.47 +0.6
35,001 + GFF4892 0.56 +0.3
35,154 + GFF4892 0.68 -0.4
35,154 + GFF4892 0.68 -0.6
35,155 - GFF4892 0.68 +0.2
35,155 - GFF4892 0.68 +0.1
35,155 - GFF4892 0.68 -1.3
35,155 - GFF4892 0.68 +0.0
35,262 + GFF4892 0.76 -0.8
35,263 - GFF4892 0.77 +0.6
35,263 - GFF4892 0.77 +0.5
35,263 - GFF4892 0.77 -1.0
35,506 - +1.1
35,506 - -0.1
35,506 - +1.7
35,554 - +0.4
35,803 + GFF4893 0.19 +1.3
35,803 + GFF4893 0.19 +0.7
35,803 + GFF4893 0.19 +0.3
35,803 + GFF4893 0.19 +0.4
35,804 - GFF4893 0.19 -0.1
35,893 + GFF4893 0.27 +0.7
35,893 + GFF4893 0.27 +0.1
35,894 - GFF4893 0.27 +0.5
36,002 + GFF4893 0.37 -0.5
36,158 - GFF4893 0.51 +0.8
36,158 - GFF4893 0.51 +1.0
36,158 - GFF4893 0.51 +0.4
36,169 + GFF4893 0.52 -0.1
36,169 + GFF4893 0.52 -1.0
36,169 + GFF4893 0.52 +0.3
36,170 - GFF4893 0.52 +0.8
36,170 - GFF4893 0.52 -0.6
36,346 + GFF4893 0.68 +0.2
36,347 - GFF4893 0.68 -0.6
36,347 - GFF4893 0.68 +0.5
36,347 - GFF4893 0.68 -0.6
36,347 - GFF4893 0.68 +2.0
36,347 - GFF4893 0.68 +0.1
36,347 - GFF4893 0.68 +0.4
36,347 - GFF4893 0.68 +1.7
36,379 + GFF4893 0.71 -0.6
36,395 - GFF4893 0.72 +0.0
36,425 - GFF4893 0.75 -1.1
36,442 + GFF4893 0.77 -0.2
36,443 - GFF4893 0.77 +0.2
36,616 + -0.4
36,617 - +0.3
36,716 + -0.4
36,716 + -0.8
36,717 - +0.7
37,170 + GFF4894 0.48 +0.4
37,170 + GFF4894 0.48 +0.7
37,170 + GFF4894 0.48 +0.4
37,170 + GFF4894 0.48 +0.0
37,171 - GFF4894 0.48 +0.4
37,171 - GFF4894 0.48 -0.2
37,500 + GFF4894 0.87 -0.9
37,500 + GFF4894 0.87 +2.8
37,501 - GFF4894 0.87 +0.6
37,501 - GFF4894 0.87 +0.3
37,501 - GFF4894 0.87 -1.2
37,652 + -0.5
37,652 + -0.2
37,652 + -0.3
37,653 - +0.3
37,653 - +0.6
37,653 - -0.7
37,665 - -0.2

Or see this region's nucleotide sequence