Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4848 and GFF4849 are separated by 19 nucleotides GFF4849 and GFF4850 are separated by 22 nucleotides GFF4850 and GFF4851 are separated by 62 nucleotides GFF4851 and GFF4852 are separated by 127 nucleotides GFF4852 and GFF4853 are separated by 52 nucleotides GFF4853 and GFF4854 are separated by 13 nucleotides
GFF4848 - hypothetical protein, at 7,171 to 7,641
GFF4848
GFF4849 - hypothetical protein, at 7,661 to 7,861
GFF4849
GFF4850 - Ferredoxin-3, at 7,884 to 8,180
GFF4850
GFF4851 - hypothetical protein, at 8,243 to 8,896
GFF4851
GFF4852 - hypothetical protein, at 9,024 to 9,341
GFF4852
GFF4853 - hypothetical protein, at 9,394 to 9,648
GFF4853
GFF4854 - 3-mercaptopyruvate sulfurtransferase, at 9,662 to 10,522
GFF4854
Position (kb) 8
9 Strain fitness (log2 ratio) -1
0
1 at 7.309 kb on + strand, within GFF4848 at 7.309 kb on + strand, within GFF4848 at 7.310 kb on - strand, within GFF4848 at 7.311 kb on + strand, within GFF4848 at 7.311 kb on + strand, within GFF4848 at 7.311 kb on + strand, within GFF4848 at 7.311 kb on + strand, within GFF4848 at 7.311 kb on + strand, within GFF4848 at 7.312 kb on - strand, within GFF4848 at 7.695 kb on - strand, within GFF4849 at 7.889 kb on + strand at 7.889 kb on + strand at 7.890 kb on - strand at 7.926 kb on + strand, within GFF4850 at 7.926 kb on + strand, within GFF4850 at 7.974 kb on + strand, within GFF4850 at 7.975 kb on - strand, within GFF4850 at 7.975 kb on - strand, within GFF4850 at 7.976 kb on - strand, within GFF4850 at 8.261 kb on + strand at 8.261 kb on + strand at 8.261 kb on + strand at 8.261 kb on + strand at 8.262 kb on - strand at 8.262 kb on - strand at 8.262 kb on - strand at 8.516 kb on - strand, within GFF4851 at 8.528 kb on + strand, within GFF4851 at 8.528 kb on + strand, within GFF4851 at 8.528 kb on + strand, within GFF4851 at 8.529 kb on - strand, within GFF4851 at 8.563 kb on - strand, within GFF4851 at 8.717 kb on + strand, within GFF4851 at 8.717 kb on + strand, within GFF4851 at 8.718 kb on - strand, within GFF4851 at 8.794 kb on - strand, within GFF4851 at 8.895 kb on - strand at 8.966 kb on + strand at 8.966 kb on + strand at 8.967 kb on - strand at 9.423 kb on - strand, within GFF4853 at 9.498 kb on - strand, within GFF4853 at 9.723 kb on + strand at 9.723 kb on + strand at 9.753 kb on + strand, within GFF4854
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 7,309 + GFF4848 0.29 -0.8 7,309 + GFF4848 0.29 -0.7 7,310 - GFF4848 0.30 -0.8 7,311 + GFF4848 0.30 -1.0 7,311 + GFF4848 0.30 +0.4 7,311 + GFF4848 0.30 -0.8 7,311 + GFF4848 0.30 +0.7 7,311 + GFF4848 0.30 +0.5 7,312 - GFF4848 0.30 +0.4 7,695 - GFF4849 0.17 +0.4 7,889 + +0.2 7,889 + -0.6 7,890 - +0.4 7,926 + GFF4850 0.14 -0.1 7,926 + GFF4850 0.14 +1.1 7,974 + GFF4850 0.30 -1.0 7,975 - GFF4850 0.31 -0.2 7,975 - GFF4850 0.31 -0.6 7,976 - GFF4850 0.31 -1.0 8,261 + -1.1 8,261 + -0.5 8,261 + +0.4 8,261 + -0.3 8,262 - -0.3 8,262 - -0.1 8,262 - +0.1 8,516 - GFF4851 0.42 -0.3 8,528 + GFF4851 0.44 -0.9 8,528 + GFF4851 0.44 -1.4 8,528 + GFF4851 0.44 -0.1 8,529 - GFF4851 0.44 -0.5 8,563 - GFF4851 0.49 -0.1 8,717 + GFF4851 0.72 +1.3 8,717 + GFF4851 0.72 -0.2 8,718 - GFF4851 0.73 -0.8 8,794 - GFF4851 0.84 +0.7 8,895 - -0.5 8,966 + -0.3 8,966 + -0.1 8,967 - +0.2 9,423 - GFF4853 0.11 -0.7 9,498 - GFF4853 0.41 +0.0 9,723 + +0.3 9,723 + -0.5 9,753 + GFF4854 0.11 +0.8
Or see this region's nucleotide sequence