Strain Fitness in Xanthobacter sp. DMC5 around GFF4844

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4843 and GFF4844 are separated by 98 nucleotidesGFF4844 and GFF4845 are separated by 132 nucleotides GFF4843 - Nitrogenase molybdenum-iron protein alpha chain, at 85 to 1,590 GFF4843 GFF4844 - Nitrogenase molybdenum-iron protein beta chain, at 1,689 to 3,248 GFF4844 GFF4845 - Light-independent protochlorophyllide reductase subunit B, at 3,381 to 5,276 GFF4845 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2at 0.769 kb on + strand, within GFF4843at 0.770 kb on - strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.793 kb on + strand, within GFF4843at 0.794 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.826 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.935 kb on - strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.949 kb on + strand, within GFF4843at 0.950 kb on - strand, within GFF4843at 0.997 kb on + strand, within GFF4843at 0.998 kb on - strand, within GFF4843at 0.998 kb on - strand, within GFF4843at 1.051 kb on + strand, within GFF4843at 1.099 kb on + strand, within GFF4843at 1.099 kb on + strand, within GFF4843at 1.100 kb on - strand, within GFF4843at 1.132 kb on + strand, within GFF4843at 1.168 kb on + strand, within GFF4843at 1.168 kb on + strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.169 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.208 kb on - strand, within GFF4843at 1.244 kb on - strand, within GFF4843at 1.267 kb on + strand, within GFF4843at 1.267 kb on + strand, within GFF4843at 1.268 kb on - strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.288 kb on + strand, within GFF4843at 1.289 kb on - strand, within GFF4843at 1.289 kb on - strand, within GFF4843at 1.312 kb on + strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.313 kb on - strand, within GFF4843at 1.331 kb on - strand, within GFF4843at 1.396 kb on + strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.397 kb on - strand, within GFF4843at 1.447 kb on + strandat 1.447 kb on + strandat 1.447 kb on + strandat 1.447 kb on + strandat 1.448 kb on - strandat 1.448 kb on - strandat 1.459 kb on + strandat 1.459 kb on + strandat 1.460 kb on - strandat 1.460 kb on - strandat 1.661 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.674 kb on + strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.675 kb on - strandat 1.677 kb on + strandat 1.678 kb on - strandat 1.981 kb on - strand, within GFF4844at 1.981 kb on - strand, within GFF4844at 1.981 kb on - strand, within GFF4844at 1.983 kb on + strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 1.984 kb on - strand, within GFF4844at 2.103 kb on + strand, within GFF4844at 2.104 kb on - strand, within GFF4844at 2.112 kb on + strand, within GFF4844at 2.200 kb on - strand, within GFF4844at 2.223 kb on + strand, within GFF4844at 2.224 kb on - strand, within GFF4844at 2.224 kb on - strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.394 kb on + strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.395 kb on - strand, within GFF4844at 2.451 kb on + strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.452 kb on - strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.514 kb on + strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.515 kb on - strand, within GFF4844at 2.586 kb on + strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.587 kb on - strand, within GFF4844at 2.805 kb on + strand, within GFF4844at 2.805 kb on + strand, within GFF4844at 2.806 kb on - strand, within GFF4844at 2.930 kb on + strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.931 kb on - strand, within GFF4844at 2.962 kb on - strand, within GFF4844at 2.962 kb on - strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.036 kb on + strand, within GFF4844at 3.037 kb on - strand, within GFF4844at 3.045 kb on + strand, within GFF4844at 3.045 kb on + strand, within GFF4844at 3.135 kb on + strandat 3.136 kb on - strandat 3.226 kb on - strandat 3.226 kb on - strandat 3.254 kb on + strandat 3.254 kb on + strandat 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.596 kb on + strand, within GFF4845at 3.597 kb on - strand, within GFF4845at 3.597 kb on - strand, within GFF4845at 3.739 kb on - strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.762 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.871 kb on + strand, within GFF4845at 3.872 kb on - strand, within GFF4845at 3.872 kb on - strand, within GFF4845at 3.948 kb on + strand, within GFF4845at 3.949 kb on - strand, within GFF4845at 3.949 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.961 kb on - strand, within GFF4845at 3.985 kb on - strand, within GFF4845at 3.985 kb on - strand, within GFF4845at 4.074 kb on + strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.075 kb on - strand, within GFF4845at 4.080 kb on + strand, within GFF4845at 4.168 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845at 4.198 kb on - strand, within GFF4845

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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769 + GFF4843 0.45 +0.0
770 - GFF4843 0.45 -0.1
793 + GFF4843 0.47 +0.0
793 + GFF4843 0.47 +0.5
793 + GFF4843 0.47 -0.6
794 - GFF4843 0.47 +0.5
826 - GFF4843 0.49 -0.8
826 - GFF4843 0.49 -0.4
826 - GFF4843 0.49 +0.1
826 - GFF4843 0.49 -0.1
935 - GFF4843 0.56 +0.6
935 - GFF4843 0.56 +0.4
935 - GFF4843 0.56 -0.2
949 + GFF4843 0.57 -1.0
949 + GFF4843 0.57 +1.8
949 + GFF4843 0.57 -0.1
950 - GFF4843 0.57 -0.3
997 + GFF4843 0.61 -0.8
998 - GFF4843 0.61 +0.9
998 - GFF4843 0.61 -0.5
1,051 + GFF4843 0.64 +0.1
1,099 + GFF4843 0.67 -0.4
1,099 + GFF4843 0.67 +0.8
1,100 - GFF4843 0.67 -0.4
1,132 + GFF4843 0.70 +0.1
1,168 + GFF4843 0.72 +0.3
1,168 + GFF4843 0.72 -0.6
1,169 - GFF4843 0.72 -1.6
1,169 - GFF4843 0.72 -0.1
1,169 - GFF4843 0.72 -0.3
1,169 - GFF4843 0.72 +0.5
1,208 - GFF4843 0.75 -1.6
1,208 - GFF4843 0.75 -0.1
1,208 - GFF4843 0.75 +0.9
1,244 - GFF4843 0.77 -0.7
1,267 + GFF4843 0.78 +1.5
1,267 + GFF4843 0.78 +0.4
1,268 - GFF4843 0.79 +0.7
1,288 + GFF4843 0.80 -1.6
1,288 + GFF4843 0.80 +1.3
1,288 + GFF4843 0.80 +1.7
1,288 + GFF4843 0.80 -0.4
1,289 - GFF4843 0.80 -0.6
1,289 - GFF4843 0.80 -0.6
1,312 + GFF4843 0.81 -0.2
1,313 - GFF4843 0.82 -0.4
1,313 - GFF4843 0.82 -0.2
1,313 - GFF4843 0.82 -0.7
1,313 - GFF4843 0.82 -2.3
1,313 - GFF4843 0.82 +0.1
1,313 - GFF4843 0.82 +0.9
1,331 - GFF4843 0.83 +0.7
1,396 + GFF4843 0.87 -1.5
1,397 - GFF4843 0.87 -1.2
1,397 - GFF4843 0.87 +0.2
1,397 - GFF4843 0.87 +0.3
1,447 + -0.5
1,447 + +0.2
1,447 + -0.5
1,447 + +0.0
1,448 - -0.7
1,448 - +0.3
1,459 + -1.1
1,459 + +0.1
1,460 - -2.1
1,460 - +0.4
1,661 + -0.5
1,674 + +0.2
1,674 + -0.3
1,674 + -0.4
1,674 + -0.1
1,674 + +0.2
1,674 + +1.0
1,674 + -0.5
1,674 + +0.4
1,674 + +0.6
1,675 - +0.0
1,675 - -0.3
1,675 - +0.0
1,675 - +0.2
1,675 - -0.5
1,675 - +0.4
1,675 - +1.0
1,675 - -0.7
1,677 + +0.2
1,678 - +1.3
1,981 - GFF4844 0.19 +0.9
1,981 - GFF4844 0.19 -0.6
1,981 - GFF4844 0.19 +0.5
1,983 + GFF4844 0.19 -1.1
1,984 - GFF4844 0.19 +0.3
1,984 - GFF4844 0.19 -1.2
1,984 - GFF4844 0.19 +0.4
1,984 - GFF4844 0.19 +0.4
2,103 + GFF4844 0.27 +1.3
2,104 - GFF4844 0.27 +0.9
2,112 + GFF4844 0.27 -1.4
2,200 - GFF4844 0.33 -0.9
2,223 + GFF4844 0.34 +0.7
2,224 - GFF4844 0.34 +0.2
2,224 - GFF4844 0.34 +0.4
2,394 + GFF4844 0.45 -1.4
2,394 + GFF4844 0.45 -0.8
2,394 + GFF4844 0.45 -0.4
2,394 + GFF4844 0.45 -0.2
2,394 + GFF4844 0.45 +0.0
2,394 + GFF4844 0.45 -0.4
2,395 - GFF4844 0.45 +0.4
2,395 - GFF4844 0.45 +1.8
2,395 - GFF4844 0.45 -0.1
2,451 + GFF4844 0.49 +0.0
2,452 - GFF4844 0.49 -0.6
2,452 - GFF4844 0.49 +0.2
2,452 - GFF4844 0.49 -0.1
2,514 + GFF4844 0.53 -0.0
2,514 + GFF4844 0.53 +0.1
2,515 - GFF4844 0.53 +0.0
2,515 - GFF4844 0.53 +0.4
2,515 - GFF4844 0.53 -1.0
2,515 - GFF4844 0.53 -0.7
2,515 - GFF4844 0.53 +0.8
2,515 - GFF4844 0.53 +0.3
2,515 - GFF4844 0.53 -0.4
2,586 + GFF4844 0.57 +0.0
2,587 - GFF4844 0.58 -0.1
2,587 - GFF4844 0.58 -0.8
2,587 - GFF4844 0.58 -0.2
2,587 - GFF4844 0.58 +0.2
2,805 + GFF4844 0.72 -0.6
2,805 + GFF4844 0.72 -0.3
2,806 - GFF4844 0.72 +0.4
2,930 + GFF4844 0.80 +0.5
2,931 - GFF4844 0.80 -1.2
2,931 - GFF4844 0.80 -0.3
2,931 - GFF4844 0.80 +0.0
2,962 - GFF4844 0.82 -0.5
2,962 - GFF4844 0.82 -2.2
3,036 + GFF4844 0.86 -0.2
3,036 + GFF4844 0.86 +0.5
3,036 + GFF4844 0.86 +0.6
3,037 - GFF4844 0.86 +0.0
3,045 + GFF4844 0.87 -0.0
3,045 + GFF4844 0.87 +0.3
3,135 + -0.1
3,136 - -0.6
3,226 - -0.2
3,226 - +0.8
3,254 + -0.7
3,254 + +0.8
3,596 + GFF4845 0.11 +0.0
3,596 + GFF4845 0.11 +1.0
3,596 + GFF4845 0.11 +0.3
3,596 + GFF4845 0.11 +1.0
3,596 + GFF4845 0.11 -2.2
3,597 - GFF4845 0.11 -1.7
3,597 - GFF4845 0.11 +0.3
3,739 - GFF4845 0.19 +0.5
3,762 + GFF4845 0.20 +0.2
3,762 + GFF4845 0.20 -0.3
3,762 + GFF4845 0.20 +0.1
3,871 + GFF4845 0.26 -0.2
3,871 + GFF4845 0.26 +1.6
3,871 + GFF4845 0.26 -0.1
3,872 - GFF4845 0.26 +0.6
3,872 - GFF4845 0.26 +0.6
3,948 + GFF4845 0.30 +0.5
3,949 - GFF4845 0.30 -0.3
3,949 - GFF4845 0.30 -0.3
3,961 - GFF4845 0.31 -0.2
3,961 - GFF4845 0.31 -0.7
3,961 - GFF4845 0.31 +0.9
3,961 - GFF4845 0.31 -0.5
3,985 - GFF4845 0.32 -1.1
3,985 - GFF4845 0.32 +0.0
4,074 + GFF4845 0.37 +0.3
4,075 - GFF4845 0.37 -0.1
4,075 - GFF4845 0.37 +0.3
4,075 - GFF4845 0.37 -0.5
4,080 + GFF4845 0.37 +1.5
4,168 - GFF4845 0.42 +0.2
4,198 - GFF4845 0.43 -0.2
4,198 - GFF4845 0.43 -0.2
4,198 - GFF4845 0.43 +0.3

Or see this region's nucleotide sequence