Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF483 and GFF484 are separated by 531 nucleotides GFF484 and GFF485 overlap by 4 nucleotides
GFF483 - Sensor histidine kinase RcsC, at 508,556 to 512,827
GFF483
GFF484 - Macrolide export protein MacA, at 513,359 to 514,561
GFF484
GFF485 - hypothetical protein, at 514,558 to 515,784
GFF485
Position (kb) 513
514
515 Strain fitness (log2 ratio) -2
-1
0
1
2 at 512.377 kb on - strand, within GFF483 at 512.496 kb on + strand at 512.497 kb on - strand at 512.497 kb on - strand at 512.497 kb on - strand at 512.599 kb on - strand at 512.599 kb on - strand at 512.619 kb on + strand at 512.619 kb on + strand at 512.620 kb on - strand at 512.620 kb on - strand at 513.038 kb on - strand at 513.109 kb on + strand at 513.110 kb on - strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.113 kb on + strand at 513.114 kb on - strand at 513.114 kb on - strand at 513.141 kb on + strand at 513.141 kb on + strand at 513.397 kb on - strand at 513.776 kb on + strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.777 kb on - strand, within GFF484 at 513.920 kb on + strand, within GFF484 at 513.921 kb on - strand, within GFF484 at 513.989 kb on + strand, within GFF484 at 514.215 kb on - strand, within GFF484 at 514.218 kb on + strand, within GFF484 at 514.235 kb on - strand, within GFF484 at 514.287 kb on - strand, within GFF484 at 514.463 kb on + strand at 514.464 kb on - strand at 514.464 kb on - strand at 514.987 kb on + strand, within GFF485 at 514.987 kb on + strand, within GFF485 at 514.988 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.015 kb on - strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.016 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.281 kb on + strand, within GFF485 at 515.282 kb on - strand, within GFF485 at 515.282 kb on - strand, within GFF485
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 512,377 - GFF483 0.89 +0.3 512,496 + -0.4 512,497 - -0.3 512,497 - +0.1 512,497 - -0.5 512,599 - +1.3 512,599 - -0.8 512,619 + +0.3 512,619 + -0.0 512,620 - +1.3 512,620 - +0.0 513,038 - -0.1 513,109 + -0.0 513,110 - +0.2 513,113 + -0.5 513,113 + -0.4 513,113 + -0.2 513,114 - -0.4 513,114 - +1.8 513,141 + -1.7 513,141 + +0.2 513,397 - +1.5 513,776 + GFF484 0.35 -0.3 513,777 - GFF484 0.35 +0.3 513,777 - GFF484 0.35 -0.2 513,777 - GFF484 0.35 -0.3 513,777 - GFF484 0.35 -0.6 513,920 + GFF484 0.47 +0.9 513,921 - GFF484 0.47 -0.3 513,989 + GFF484 0.52 +0.8 514,215 - GFF484 0.71 -0.2 514,218 + GFF484 0.71 -0.6 514,235 - GFF484 0.73 -0.9 514,287 - GFF484 0.77 -1.9 514,463 + +0.2 514,464 - -1.4 514,464 - +0.2 514,987 + GFF485 0.35 -0.4 514,987 + GFF485 0.35 +0.2 514,988 - GFF485 0.35 -0.9 515,015 - GFF485 0.37 -0.4 515,015 - GFF485 0.37 -1.9 515,015 - GFF485 0.37 +0.6 515,016 + GFF485 0.37 -1.4 515,016 + GFF485 0.37 +0.4 515,016 + GFF485 0.37 -0.8 515,281 + GFF485 0.59 +0.6 515,281 + GFF485 0.59 -0.8 515,281 + GFF485 0.59 -0.5 515,281 + GFF485 0.59 +0.4 515,282 - GFF485 0.59 -1.8 515,282 - GFF485 0.59 -0.5
Or see this region's nucleotide sequence