Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4803 and GFF4804 are separated by 25 nucleotides GFF4804 and GFF4805 are separated by 102 nucleotides GFF4805 and GFF4806 are separated by 2 nucleotides GFF4806 and GFF4807 overlap by 11 nucleotides
GFF4803 - Short-chain-enoyl-CoA hydratase, at 43,766 to 44,578
GFF4803
GFF4804 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 44,604 to 45,383
GFF4804
GFF4805 - Acetyl-coenzyme A synthetase, at 45,486 to 47,414
GFF4805
GFF4806 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 47,417 to 48,148
GFF4806
GFF4807 - Lipopolysaccharide export system ATP-binding protein LptB, at 48,138 to 48,878
GFF4807
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.562 kb on + strand at 44.563 kb on - strand at 44.563 kb on - strand at 44.662 kb on + strand at 44.662 kb on + strand at 44.663 kb on - strand at 44.663 kb on - strand at 44.738 kb on - strand, within GFF4804 at 44.756 kb on + strand, within GFF4804 at 44.756 kb on + strand, within GFF4804 at 44.757 kb on - strand, within GFF4804 at 44.758 kb on + strand, within GFF4804 at 44.759 kb on - strand, within GFF4804 at 44.759 kb on - strand, within GFF4804 at 44.759 kb on - strand, within GFF4804 at 44.804 kb on + strand, within GFF4804 at 44.804 kb on + strand, within GFF4804 at 44.895 kb on - strand, within GFF4804 at 44.935 kb on + strand, within GFF4804 at 45.014 kb on - strand, within GFF4804 at 45.014 kb on - strand, within GFF4804 at 45.038 kb on - strand, within GFF4804 at 45.348 kb on - strand at 45.348 kb on - strand at 45.385 kb on + strand at 45.386 kb on - strand at 45.386 kb on - strand at 45.503 kb on + strand at 45.503 kb on + strand at 45.503 kb on + strand at 45.503 kb on + strand at 45.504 kb on - strand at 45.504 kb on - strand at 45.571 kb on + strand at 45.571 kb on + strand at 45.603 kb on - strand at 45.603 kb on - strand at 45.603 kb on - strand at 45.604 kb on - strand at 45.608 kb on + strand at 45.608 kb on + strand at 45.608 kb on + strand at 45.608 kb on + strand at 45.609 kb on - strand at 45.609 kb on - strand at 45.630 kb on + strand at 45.630 kb on + strand at 45.915 kb on + strand, within GFF4805 at 45.916 kb on - strand, within GFF4805 at 45.955 kb on + strand, within GFF4805 at 45.955 kb on + strand, within GFF4805 at 45.968 kb on - strand, within GFF4805 at 45.968 kb on - strand, within GFF4805 at 46.177 kb on + strand, within GFF4805 at 46.178 kb on - strand, within GFF4805 at 46.178 kb on - strand, within GFF4805 at 46.227 kb on + strand, within GFF4805 at 46.420 kb on + strand, within GFF4805 at 46.420 kb on + strand, within GFF4805 at 46.592 kb on + strand, within GFF4805 at 46.593 kb on - strand, within GFF4805 at 46.912 kb on - strand, within GFF4805 at 46.936 kb on + strand, within GFF4805 at 46.937 kb on - strand, within GFF4805 at 47.068 kb on + strand, within GFF4805 at 47.068 kb on + strand, within GFF4805 at 47.068 kb on + strand, within GFF4805 at 47.069 kb on - strand, within GFF4805 at 47.218 kb on + strand, within GFF4805 at 47.228 kb on - strand at 47.254 kb on - strand at 47.257 kb on + strand at 47.275 kb on + strand at 47.276 kb on - strand at 47.276 kb on - strand at 47.305 kb on + strand at 47.306 kb on - strand at 47.306 kb on - strand at 47.306 kb on - strand at 47.325 kb on + strand at 47.325 kb on + strand at 47.326 kb on - strand at 47.371 kb on + strand at 47.371 kb on + strand at 47.371 kb on + strand at 47.372 kb on - strand at 47.393 kb on + strand at 47.393 kb on + strand at 47.393 kb on + strand at 47.394 kb on - strand at 47.394 kb on - strand at 47.420 kb on + strand at 47.431 kb on - strand at 47.508 kb on + strand, within GFF4806 at 47.508 kb on + strand, within GFF4806 at 47.508 kb on + strand, within GFF4806 at 47.509 kb on - strand, within GFF4806 at 47.509 kb on - strand, within GFF4806 at 47.722 kb on + strand, within GFF4806 at 47.747 kb on + strand, within GFF4806 at 47.992 kb on + strand, within GFF4806 at 47.992 kb on + strand, within GFF4806 at 47.992 kb on + strand, within GFF4806 at 47.992 kb on + strand, within GFF4806 at 47.993 kb on - strand, within GFF4806 at 47.993 kb on - strand, within GFF4806 at 47.993 kb on - strand, within GFF4806 at 48.091 kb on - strand at 48.163 kb on + strand at 48.163 kb on + strand at 48.163 kb on + strand at 48.163 kb on + strand at 48.164 kb on - strand at 48.164 kb on - strand at 48.164 kb on - strand at 48.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 44,562 + +0.2 44,563 - -1.6 44,563 - +0.8 44,662 + -0.1 44,662 + -0.3 44,663 - +0.1 44,663 - +0.7 44,738 - GFF4804 0.17 -0.0 44,756 + GFF4804 0.19 +0.3 44,756 + GFF4804 0.19 +0.5 44,757 - GFF4804 0.20 +0.3 44,758 + GFF4804 0.20 +0.3 44,759 - GFF4804 0.20 +0.3 44,759 - GFF4804 0.20 -0.3 44,759 - GFF4804 0.20 -0.1 44,804 + GFF4804 0.26 +0.7 44,804 + GFF4804 0.26 +0.4 44,895 - GFF4804 0.37 -0.2 44,935 + GFF4804 0.42 -0.0 45,014 - GFF4804 0.53 -0.0 45,014 - GFF4804 0.53 +1.2 45,038 - GFF4804 0.56 -1.0 45,348 - -0.2 45,348 - -0.6 45,385 + -1.3 45,386 - +1.0 45,386 - +0.1 45,503 + -1.0 45,503 + +0.3 45,503 + +0.0 45,503 + +0.9 45,504 - -0.1 45,504 - +0.0 45,571 + +0.3 45,571 + -0.5 45,603 - -0.4 45,603 - +1.3 45,603 - -0.6 45,604 - -0.6 45,608 + +0.2 45,608 + +0.9 45,608 + -0.1 45,608 + +1.2 45,609 - +1.7 45,609 - -0.7 45,630 + +0.1 45,630 + +0.4 45,915 + GFF4805 0.22 +1.0 45,916 - GFF4805 0.22 +0.4 45,955 + GFF4805 0.24 +0.2 45,955 + GFF4805 0.24 +1.2 45,968 - GFF4805 0.25 -0.6 45,968 - GFF4805 0.25 +0.0 46,177 + GFF4805 0.36 +1.1 46,178 - GFF4805 0.36 +0.5 46,178 - GFF4805 0.36 +0.1 46,227 + GFF4805 0.38 +0.0 46,420 + GFF4805 0.48 +1.4 46,420 + GFF4805 0.48 -0.0 46,592 + GFF4805 0.57 -0.4 46,593 - GFF4805 0.57 +0.3 46,912 - GFF4805 0.74 -1.4 46,936 + GFF4805 0.75 -0.5 46,937 - GFF4805 0.75 +0.7 47,068 + GFF4805 0.82 +0.0 47,068 + GFF4805 0.82 +0.9 47,068 + GFF4805 0.82 -0.2 47,069 - GFF4805 0.82 -0.2 47,218 + GFF4805 0.90 -2.8 47,228 - +0.4 47,254 - +0.1 47,257 + +0.4 47,275 + -0.4 47,276 - +1.2 47,276 - +0.1 47,305 + -0.7 47,306 - -0.3 47,306 - +1.6 47,306 - -2.1 47,325 + -0.3 47,325 + +1.2 47,326 - +0.1 47,371 + -0.1 47,371 + -1.5 47,371 + -1.0 47,372 - +0.6 47,393 + +0.1 47,393 + +0.7 47,393 + +0.5 47,394 - -0.3 47,394 - +0.8 47,420 + +1.7 47,431 - -0.1 47,508 + GFF4806 0.12 -0.0 47,508 + GFF4806 0.12 +0.5 47,508 + GFF4806 0.12 +0.8 47,509 - GFF4806 0.13 +1.3 47,509 - GFF4806 0.13 +0.0 47,722 + GFF4806 0.42 +1.8 47,747 + GFF4806 0.45 -0.4 47,992 + GFF4806 0.79 +0.0 47,992 + GFF4806 0.79 +0.5 47,992 + GFF4806 0.79 -0.0 47,992 + GFF4806 0.79 +0.0 47,993 - GFF4806 0.79 +0.1 47,993 - GFF4806 0.79 +1.2 47,993 - GFF4806 0.79 -0.5 48,091 - -0.1 48,163 + -0.1 48,163 + -0.5 48,163 + -0.1 48,163 + +0.2 48,164 - -0.4 48,164 - -0.6 48,164 - +0.3 48,164 - -1.7
Or see this region's nucleotide sequence