Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4799 and GFF4800 are separated by 7 nucleotides GFF4800 and GFF4801 are separated by 9 nucleotides GFF4801 and GFF4802 are separated by 11 nucleotides
GFF4799 - Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase, at 38,917 to 40,071
GFF4799
GFF4800 - 3-hydroxyisobutyrate dehydrogenase, at 40,079 to 40,957
GFF4800
GFF4801 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 40,967 to 41,719
GFF4801
GFF4802 - Metal reductase, at 41,731 to 43,764
GFF4802
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2 at 40.001 kb on + strand at 40.278 kb on + strand, within GFF4800 at 40.389 kb on + strand, within GFF4800 at 40.424 kb on + strand, within GFF4800 at 40.425 kb on - strand, within GFF4800 at 40.897 kb on + strand at 40.898 kb on - strand at 40.901 kb on + strand at 40.901 kb on + strand at 40.902 kb on - strand at 40.902 kb on - strand at 40.902 kb on - strand at 41.040 kb on + strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.041 kb on - strand at 41.051 kb on - strand, within GFF4801 at 41.051 kb on - strand, within GFF4801 at 41.129 kb on + strand, within GFF4801 at 41.129 kb on + strand, within GFF4801 at 41.130 kb on - strand, within GFF4801 at 41.130 kb on - strand, within GFF4801 at 41.199 kb on + strand, within GFF4801 at 41.199 kb on + strand, within GFF4801 at 41.200 kb on - strand, within GFF4801 at 41.200 kb on - strand, within GFF4801 at 41.200 kb on - strand, within GFF4801 at 41.200 kb on - strand, within GFF4801 at 41.200 kb on - strand, within GFF4801 at 41.253 kb on + strand, within GFF4801 at 41.254 kb on - strand, within GFF4801 at 41.254 kb on - strand, within GFF4801 at 41.254 kb on - strand, within GFF4801 at 41.254 kb on - strand, within GFF4801 at 41.370 kb on + strand, within GFF4801 at 41.643 kb on + strand, within GFF4801 at 41.643 kb on + strand, within GFF4801 at 41.643 kb on + strand, within GFF4801 at 41.643 kb on + strand, within GFF4801 at 41.643 kb on + strand, within GFF4801 at 41.644 kb on - strand at 41.668 kb on + strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.724 kb on - strand at 41.772 kb on + strand at 41.772 kb on + strand at 41.773 kb on - strand at 42.252 kb on - strand, within GFF4802 at 42.257 kb on + strand, within GFF4802 at 42.257 kb on + strand, within GFF4802 at 42.258 kb on - strand, within GFF4802 at 42.621 kb on + strand, within GFF4802 at 42.621 kb on + strand, within GFF4802 at 42.622 kb on - strand, within GFF4802 at 42.680 kb on + strand, within GFF4802 at 42.680 kb on + strand, within GFF4802 at 42.680 kb on + strand, within GFF4802 at 42.680 kb on + strand, within GFF4802 at 42.681 kb on - strand, within GFF4802 at 42.681 kb on - strand, within GFF4802 at 42.682 kb on + strand, within GFF4802
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 40,001 + +0.1 40,278 + GFF4800 0.23 -0.5 40,389 + GFF4800 0.35 +0.0 40,424 + GFF4800 0.39 -0.5 40,425 - GFF4800 0.39 +0.3 40,897 + +0.4 40,898 - -0.2 40,901 + +0.1 40,901 + +0.3 40,902 - +0.4 40,902 - +0.9 40,902 - +2.0 41,040 + +0.4 41,041 - -0.0 41,041 - -1.5 41,041 - -0.1 41,041 - +0.7 41,041 - +0.2 41,041 - -0.4 41,041 - +0.0 41,041 - +0.4 41,051 - GFF4801 0.11 -0.4 41,051 - GFF4801 0.11 +0.0 41,129 + GFF4801 0.22 -0.3 41,129 + GFF4801 0.22 +0.3 41,130 - GFF4801 0.22 +0.8 41,130 - GFF4801 0.22 +1.7 41,199 + GFF4801 0.31 +0.6 41,199 + GFF4801 0.31 -0.1 41,200 - GFF4801 0.31 +0.3 41,200 - GFF4801 0.31 -0.4 41,200 - GFF4801 0.31 -0.0 41,200 - GFF4801 0.31 +2.2 41,200 - GFF4801 0.31 -1.0 41,253 + GFF4801 0.38 +0.4 41,254 - GFF4801 0.38 +0.1 41,254 - GFF4801 0.38 -0.5 41,254 - GFF4801 0.38 -0.2 41,254 - GFF4801 0.38 -1.4 41,370 + GFF4801 0.54 -0.2 41,643 + GFF4801 0.90 +0.3 41,643 + GFF4801 0.90 -0.5 41,643 + GFF4801 0.90 +0.4 41,643 + GFF4801 0.90 -0.6 41,643 + GFF4801 0.90 +0.3 41,644 - -1.0 41,668 + -0.1 41,724 - +1.0 41,724 - -1.7 41,724 - -0.9 41,724 - -0.4 41,724 - -0.6 41,772 + +1.8 41,772 + +0.8 41,773 - -0.4 42,252 - GFF4802 0.26 +0.1 42,257 + GFF4802 0.26 -0.5 42,257 + GFF4802 0.26 +0.6 42,258 - GFF4802 0.26 +1.0 42,621 + GFF4802 0.44 +0.0 42,621 + GFF4802 0.44 +0.1 42,622 - GFF4802 0.44 -0.0 42,680 + GFF4802 0.47 -0.7 42,680 + GFF4802 0.47 -0.3 42,680 + GFF4802 0.47 -0.5 42,680 + GFF4802 0.47 -0.8 42,681 - GFF4802 0.47 -0.1 42,681 - GFF4802 0.47 -1.3 42,682 + GFF4802 0.47 +0.0
Or see this region's nucleotide sequence