Strain Fitness in Xanthobacter sp. DMC5 around GFF4800

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4799 and GFF4800 are separated by 7 nucleotidesGFF4800 and GFF4801 are separated by 9 nucleotidesGFF4801 and GFF4802 are separated by 11 nucleotides GFF4799 - Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase, at 38,917 to 40,071 GFF4799 GFF4800 - 3-hydroxyisobutyrate dehydrogenase, at 40,079 to 40,957 GFF4800 GFF4801 - 2-(R)-hydroxypropyl-CoM dehydrogenase, at 40,967 to 41,719 GFF4801 GFF4802 - Metal reductase, at 41,731 to 43,764 GFF4802 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.206 kb on + strand, within GFF4799at 39.207 kb on - strand, within GFF4799at 39.207 kb on - strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.262 kb on + strand, within GFF4799at 39.371 kb on + strand, within GFF4799at 39.523 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.641 kb on + strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.642 kb on - strand, within GFF4799at 39.759 kb on - strand, within GFF4799at 39.759 kb on - strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.809 kb on + strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.810 kb on - strand, within GFF4799at 39.905 kb on + strand, within GFF4799at 39.906 kb on - strand, within GFF4799at 39.906 kb on - strand, within GFF4799at 40.001 kb on + strandat 40.278 kb on + strand, within GFF4800at 40.389 kb on + strand, within GFF4800at 40.424 kb on + strand, within GFF4800at 40.425 kb on - strand, within GFF4800at 40.897 kb on + strandat 40.898 kb on - strandat 40.901 kb on + strandat 40.901 kb on + strandat 40.902 kb on - strandat 40.902 kb on - strandat 40.902 kb on - strandat 41.040 kb on + strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.041 kb on - strandat 41.051 kb on - strand, within GFF4801at 41.051 kb on - strand, within GFF4801at 41.129 kb on + strand, within GFF4801at 41.129 kb on + strand, within GFF4801at 41.130 kb on - strand, within GFF4801at 41.130 kb on - strand, within GFF4801at 41.199 kb on + strand, within GFF4801at 41.199 kb on + strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.200 kb on - strand, within GFF4801at 41.253 kb on + strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.254 kb on - strand, within GFF4801at 41.370 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.643 kb on + strand, within GFF4801at 41.644 kb on - strandat 41.668 kb on + strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.724 kb on - strandat 41.772 kb on + strandat 41.772 kb on + strandat 41.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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39,206 + GFF4799 0.25 -0.0
39,207 - GFF4799 0.25 -0.3
39,207 - GFF4799 0.25 -0.1
39,262 + GFF4799 0.30 -0.1
39,262 + GFF4799 0.30 -0.4
39,262 + GFF4799 0.30 -0.2
39,262 + GFF4799 0.30 +0.3
39,262 + GFF4799 0.30 +0.0
39,262 + GFF4799 0.30 +0.0
39,371 + GFF4799 0.39 -0.9
39,523 + GFF4799 0.52 -1.8
39,641 + GFF4799 0.63 +1.0
39,641 + GFF4799 0.63 -0.2
39,641 + GFF4799 0.63 -0.6
39,641 + GFF4799 0.63 -0.6
39,642 - GFF4799 0.63 +0.6
39,642 - GFF4799 0.63 -1.7
39,642 - GFF4799 0.63 -0.4
39,642 - GFF4799 0.63 -0.2
39,642 - GFF4799 0.63 -1.0
39,759 - GFF4799 0.73 -0.4
39,759 - GFF4799 0.73 +0.4
39,809 + GFF4799 0.77 +0.2
39,809 + GFF4799 0.77 +0.7
39,809 + GFF4799 0.77 +1.0
39,809 + GFF4799 0.77 +0.9
39,809 + GFF4799 0.77 +0.4
39,809 + GFF4799 0.77 +0.6
39,809 + GFF4799 0.77 +0.4
39,810 - GFF4799 0.77 -0.1
39,810 - GFF4799 0.77 -0.2
39,810 - GFF4799 0.77 -0.3
39,810 - GFF4799 0.77 -0.1
39,810 - GFF4799 0.77 +1.4
39,810 - GFF4799 0.77 -0.4
39,810 - GFF4799 0.77 +0.2
39,810 - GFF4799 0.77 -0.0
39,810 - GFF4799 0.77 +0.4
39,810 - GFF4799 0.77 +0.0
39,810 - GFF4799 0.77 +0.1
39,810 - GFF4799 0.77 -0.6
39,810 - GFF4799 0.77 +0.6
39,810 - GFF4799 0.77 -0.1
39,905 + GFF4799 0.86 +0.4
39,906 - GFF4799 0.86 +0.6
39,906 - GFF4799 0.86 -0.1
40,001 + +0.1
40,278 + GFF4800 0.23 -0.5
40,389 + GFF4800 0.35 +0.0
40,424 + GFF4800 0.39 -0.5
40,425 - GFF4800 0.39 +0.3
40,897 + +0.4
40,898 - -0.2
40,901 + +0.1
40,901 + +0.3
40,902 - +0.4
40,902 - +0.9
40,902 - +2.0
41,040 + +0.4
41,041 - -0.0
41,041 - -1.5
41,041 - -0.1
41,041 - +0.7
41,041 - +0.2
41,041 - -0.4
41,041 - +0.0
41,041 - +0.4
41,051 - GFF4801 0.11 -0.4
41,051 - GFF4801 0.11 +0.0
41,129 + GFF4801 0.22 -0.3
41,129 + GFF4801 0.22 +0.3
41,130 - GFF4801 0.22 +0.8
41,130 - GFF4801 0.22 +1.7
41,199 + GFF4801 0.31 +0.6
41,199 + GFF4801 0.31 -0.1
41,200 - GFF4801 0.31 +0.3
41,200 - GFF4801 0.31 -0.4
41,200 - GFF4801 0.31 -0.0
41,200 - GFF4801 0.31 +2.2
41,200 - GFF4801 0.31 -1.0
41,253 + GFF4801 0.38 +0.4
41,254 - GFF4801 0.38 +0.1
41,254 - GFF4801 0.38 -0.5
41,254 - GFF4801 0.38 -0.2
41,254 - GFF4801 0.38 -1.4
41,370 + GFF4801 0.54 -0.2
41,643 + GFF4801 0.90 +0.3
41,643 + GFF4801 0.90 -0.5
41,643 + GFF4801 0.90 +0.4
41,643 + GFF4801 0.90 -0.6
41,643 + GFF4801 0.90 +0.3
41,644 - -1.0
41,668 + -0.1
41,724 - +1.0
41,724 - -1.7
41,724 - -0.9
41,724 - -0.4
41,724 - -0.6
41,772 + +1.8
41,772 + +0.8
41,773 - -0.4

Or see this region's nucleotide sequence