Strain Fitness in Xanthobacter sp. DMC5 around GFF479

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF477 and GFF478 are separated by 231 nucleotidesGFF478 and GFF479 are separated by 36 nucleotidesGFF479 and GFF480 are separated by 131 nucleotidesGFF480 and GFF481 are separated by 329 nucleotides GFF477 - HTH-type transcriptional regulator HdfR, at 504,522 to 505,427 GFF477 GFF478 - hypothetical protein, at 505,659 to 505,901 GFF478 GFF479 - hypothetical protein, at 505,938 to 507,101 GFF479 GFF480 - hypothetical protein, at 507,233 to 507,382 GFF480 GFF481 - Phyllosphere-induced regulator PhyR, at 507,712 to 508,074 GFF481 Position (kb) 505 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2at 504.999 kb on + strand, within GFF477at 505.030 kb on - strand, within GFF477at 505.092 kb on + strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.093 kb on - strand, within GFF477at 505.095 kb on - strand, within GFF477at 505.095 kb on - strand, within GFF477at 505.128 kb on + strand, within GFF477at 505.129 kb on - strand, within GFF477at 505.129 kb on - strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.153 kb on + strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.154 kb on - strand, within GFF477at 505.234 kb on - strand, within GFF477at 505.234 kb on - strand, within GFF477at 505.419 kb on - strandat 505.627 kb on - strandat 505.939 kb on + strandat 505.940 kb on - strandat 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.104 kb on + strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.105 kb on - strand, within GFF479at 506.197 kb on + strand, within GFF479at 506.197 kb on + strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.198 kb on - strand, within GFF479at 506.498 kb on - strand, within GFF479at 506.498 kb on - strand, within GFF479at 506.522 kb on - strand, within GFF479at 506.617 kb on + strand, within GFF479at 506.686 kb on + strand, within GFF479at 506.687 kb on - strand, within GFF479at 506.687 kb on - strand, within GFF479at 506.758 kb on + strand, within GFF479at 506.801 kb on + strand, within GFF479at 506.802 kb on - strand, within GFF479at 506.830 kb on - strand, within GFF479at 506.856 kb on + strand, within GFF479at 506.857 kb on - strand, within GFF479at 506.945 kb on - strand, within GFF479at 507.085 kb on + strandat 507.085 kb on + strandat 507.086 kb on - strandat 507.235 kb on - strandat 507.306 kb on + strand, within GFF480at 507.306 kb on + strand, within GFF480at 507.307 kb on - strand, within GFF480at 507.344 kb on + strand, within GFF480at 507.345 kb on - strand, within GFF480at 507.360 kb on + strand, within GFF480at 507.361 kb on - strand, within GFF480at 507.361 kb on - strand, within GFF480at 507.368 kb on - strandat 507.368 kb on - strandat 507.474 kb on + strandat 507.475 kb on - strandat 507.475 kb on - strandat 507.475 kb on - strandat 507.622 kb on + strandat 507.622 kb on + strandat 507.623 kb on - strandat 507.691 kb on + strandat 507.692 kb on - strandat 507.692 kb on - strandat 507.877 kb on + strand, within GFF481at 507.878 kb on - strand, within GFF481at 507.878 kb on - strand, within GFF481at 507.981 kb on + strand, within GFF481at 507.981 kb on + strand, within GFF481at 507.982 kb on - strand, within GFF481

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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504,999 + GFF477 0.53 -1.6
505,030 - GFF477 0.56 -0.7
505,092 + GFF477 0.63 +1.0
505,093 - GFF477 0.63 -1.1
505,093 - GFF477 0.63 +0.9
505,093 - GFF477 0.63 -0.9
505,095 - GFF477 0.63 -0.2
505,095 - GFF477 0.63 +0.2
505,128 + GFF477 0.67 -0.4
505,129 - GFF477 0.67 -1.2
505,129 - GFF477 0.67 -0.0
505,153 + GFF477 0.70 -0.1
505,153 + GFF477 0.70 -0.6
505,153 + GFF477 0.70 -0.1
505,154 - GFF477 0.70 -0.4
505,154 - GFF477 0.70 +0.0
505,154 - GFF477 0.70 -0.7
505,154 - GFF477 0.70 +0.8
505,154 - GFF477 0.70 -0.5
505,154 - GFF477 0.70 -0.5
505,234 - GFF477 0.79 -0.3
505,234 - GFF477 0.79 -1.8
505,419 - +0.2
505,627 - +0.8
505,939 + -0.7
505,940 - -1.1
506,104 + GFF479 0.14 +0.6
506,104 + GFF479 0.14 +0.6
506,104 + GFF479 0.14 +0.5
506,104 + GFF479 0.14 -0.9
506,105 - GFF479 0.14 -0.8
506,105 - GFF479 0.14 -0.5
506,105 - GFF479 0.14 -0.3
506,105 - GFF479 0.14 +0.1
506,197 + GFF479 0.22 -0.0
506,197 + GFF479 0.22 -0.8
506,198 - GFF479 0.22 -1.0
506,198 - GFF479 0.22 -0.7
506,198 - GFF479 0.22 +0.8
506,498 - GFF479 0.48 -0.7
506,498 - GFF479 0.48 +0.3
506,522 - GFF479 0.50 -0.2
506,617 + GFF479 0.58 +0.2
506,686 + GFF479 0.64 +0.3
506,687 - GFF479 0.64 +0.4
506,687 - GFF479 0.64 +0.5
506,758 + GFF479 0.70 +1.4
506,801 + GFF479 0.74 -0.3
506,802 - GFF479 0.74 +0.3
506,830 - GFF479 0.77 -0.0
506,856 + GFF479 0.79 +0.5
506,857 - GFF479 0.79 -0.2
506,945 - GFF479 0.87 +0.4
507,085 + -0.1
507,085 + -1.3
507,086 - +1.1
507,235 - +1.2
507,306 + GFF480 0.49 -0.2
507,306 + GFF480 0.49 +0.6
507,307 - GFF480 0.49 +2.1
507,344 + GFF480 0.74 +0.4
507,345 - GFF480 0.75 -0.5
507,360 + GFF480 0.85 +0.0
507,361 - GFF480 0.85 -0.3
507,361 - GFF480 0.85 -0.5
507,368 - +0.2
507,368 - -0.2
507,474 + +0.3
507,475 - -0.1
507,475 - -0.4
507,475 - -0.4
507,622 + -0.2
507,622 + +0.3
507,623 - -0.7
507,691 + -0.1
507,692 - +0.0
507,692 - +0.2
507,877 + GFF481 0.45 -0.9
507,878 - GFF481 0.46 -0.1
507,878 - GFF481 0.46 -0.6
507,981 + GFF481 0.74 +0.4
507,981 + GFF481 0.74 +1.6
507,982 - GFF481 0.74 -1.7

Or see this region's nucleotide sequence