Strain Fitness in Xanthobacter sp. DMC5 around GFF4768

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4767 and GFF4768 are separated by 10 nucleotidesGFF4768 and GFF4769 are separated by 331 nucleotides GFF4767 - Long-chain-fatty-acid--CoA ligase, at 4,165 to 5,817 GFF4767 GFF4768 - 2,4-dienoyl-CoA reductase, at 5,828 to 7,849 GFF4768 GFF4769 - putative enoyl-CoA hydratase echA8, at 8,181 to 8,963 GFF4769 Position (kb) 5 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 4.836 kb on - strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.027 kb on + strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.028 kb on - strand, within GFF4767at 5.138 kb on + strand, within GFF4767at 5.138 kb on + strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.139 kb on - strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.213 kb on + strand, within GFF4767at 5.214 kb on - strand, within GFF4767at 5.214 kb on - strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.252 kb on + strand, within GFF4767at 5.253 kb on - strand, within GFF4767at 5.253 kb on - strand, within GFF4767at 5.381 kb on - strand, within GFF4767at 5.382 kb on + strand, within GFF4767at 5.682 kb on + strandat 5.682 kb on + strandat 5.683 kb on - strandat 5.683 kb on - strandat 5.683 kb on - strandat 5.684 kb on + strandat 5.684 kb on + strandat 5.685 kb on - strandat 5.699 kb on + strandat 5.700 kb on - strandat 5.704 kb on - strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.804 kb on + strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.805 kb on - strandat 5.946 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.027 kb on + strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.028 kb on - strandat 6.057 kb on + strand, within GFF4768at 6.059 kb on + strand, within GFF4768at 6.303 kb on + strand, within GFF4768at 6.304 kb on - strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.390 kb on + strand, within GFF4768at 6.556 kb on - strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.639 kb on + strand, within GFF4768at 6.640 kb on - strand, within GFF4768at 6.640 kb on - strand, within GFF4768at 6.640 kb on - strand, within GFF4768at 7.035 kb on + strand, within GFF4768at 7.035 kb on + strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.036 kb on - strand, within GFF4768at 7.097 kb on + strand, within GFF4768at 7.097 kb on + strand, within GFF4768at 7.097 kb on + strand, within GFF4768at 7.098 kb on - strand, within GFF4768at 7.098 kb on - strand, within GFF4768at 7.098 kb on - strand, within GFF4768at 7.206 kb on + strand, within GFF4768at 7.206 kb on + strand, within GFF4768at 7.206 kb on + strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.207 kb on - strand, within GFF4768at 7.347 kb on + strand, within GFF4768at 7.347 kb on + strand, within GFF4768at 7.348 kb on - strand, within GFF4768at 7.348 kb on - strand, within GFF4768at 7.381 kb on - strand, within GFF4768at 7.525 kb on - strand, within GFF4768at 7.534 kb on + strand, within GFF4768at 7.534 kb on + strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.535 kb on - strand, within GFF4768at 7.620 kb on + strand, within GFF4768at 7.716 kb on + strandat 7.716 kb on + strandat 7.716 kb on + strandat 7.716 kb on + strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.717 kb on - strandat 7.871 kb on + strandat 7.872 kb on - strandat 8.003 kb on + strandat 8.004 kb on - strandat 8.004 kb on - strandat 8.004 kb on - strandat 8.015 kb on + strandat 8.151 kb on + strandat 8.693 kb on + strand, within GFF4769

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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4,836 - GFF4767 0.41 -1.3
5,027 + GFF4767 0.52 -0.6
5,027 + GFF4767 0.52 -0.5
5,027 + GFF4767 0.52 +0.2
5,027 + GFF4767 0.52 +0.2
5,027 + GFF4767 0.52 +0.4
5,027 + GFF4767 0.52 +0.0
5,027 + GFF4767 0.52 +0.6
5,027 + GFF4767 0.52 +0.9
5,027 + GFF4767 0.52 -0.1
5,028 - GFF4767 0.52 +0.5
5,028 - GFF4767 0.52 +0.9
5,028 - GFF4767 0.52 -1.0
5,028 - GFF4767 0.52 +0.6
5,028 - GFF4767 0.52 -1.6
5,028 - GFF4767 0.52 +0.2
5,028 - GFF4767 0.52 +0.8
5,028 - GFF4767 0.52 +0.0
5,028 - GFF4767 0.52 -0.3
5,138 + GFF4767 0.59 +1.3
5,138 + GFF4767 0.59 -1.0
5,139 - GFF4767 0.59 +0.8
5,139 - GFF4767 0.59 -1.1
5,139 - GFF4767 0.59 +1.2
5,213 + GFF4767 0.63 -0.2
5,213 + GFF4767 0.63 -0.7
5,213 + GFF4767 0.63 -0.0
5,213 + GFF4767 0.63 +0.1
5,214 - GFF4767 0.63 -0.9
5,214 - GFF4767 0.63 +0.7
5,252 + GFF4767 0.66 +1.4
5,252 + GFF4767 0.66 -0.3
5,252 + GFF4767 0.66 -0.4
5,253 - GFF4767 0.66 +0.5
5,253 - GFF4767 0.66 +0.4
5,381 - GFF4767 0.74 -0.9
5,382 + GFF4767 0.74 -0.1
5,682 + +0.2
5,682 + +0.4
5,683 - +1.5
5,683 - +0.7
5,683 - +0.9
5,684 + -0.2
5,684 + -0.4
5,685 - +1.4
5,699 + -0.0
5,700 - -0.9
5,704 - -0.8
5,804 + -1.1
5,804 + -1.6
5,804 + +0.6
5,804 + +0.5
5,804 + +0.4
5,804 + -0.3
5,804 + -0.1
5,804 + -1.3
5,804 + -0.2
5,805 - -0.2
5,805 - -0.2
5,805 - +0.1
5,805 - -0.3
5,805 - +0.4
5,805 - -1.7
5,805 - +0.1
5,805 - +0.1
5,805 - +1.3
5,805 - +0.4
5,946 + +0.6
6,027 + -0.8
6,027 + +0.3
6,027 + -0.7
6,027 + +0.4
6,027 + -2.0
6,028 - -0.5
6,028 - +0.4
6,028 - +1.0
6,028 - +0.3
6,028 - -0.2
6,028 - -0.7
6,057 + GFF4768 0.11 -0.7
6,059 + GFF4768 0.11 +0.8
6,303 + GFF4768 0.23 +0.4
6,304 - GFF4768 0.24 +0.2
6,390 + GFF4768 0.28 -0.6
6,390 + GFF4768 0.28 +0.8
6,390 + GFF4768 0.28 +0.7
6,390 + GFF4768 0.28 +1.0
6,556 - GFF4768 0.36 +1.1
6,639 + GFF4768 0.40 +1.2
6,639 + GFF4768 0.40 +0.1
6,639 + GFF4768 0.40 -0.4
6,640 - GFF4768 0.40 -0.7
6,640 - GFF4768 0.40 +0.1
6,640 - GFF4768 0.40 +0.2
7,035 + GFF4768 0.60 +0.6
7,035 + GFF4768 0.60 +0.4
7,036 - GFF4768 0.60 -1.4
7,036 - GFF4768 0.60 +0.8
7,036 - GFF4768 0.60 +0.2
7,036 - GFF4768 0.60 +0.3
7,036 - GFF4768 0.60 +0.0
7,036 - GFF4768 0.60 -1.0
7,097 + GFF4768 0.63 +0.2
7,097 + GFF4768 0.63 -0.4
7,097 + GFF4768 0.63 +0.3
7,098 - GFF4768 0.63 +1.6
7,098 - GFF4768 0.63 -0.4
7,098 - GFF4768 0.63 -0.1
7,206 + GFF4768 0.68 -1.3
7,206 + GFF4768 0.68 +0.3
7,206 + GFF4768 0.68 +1.0
7,207 - GFF4768 0.68 -0.1
7,207 - GFF4768 0.68 +0.9
7,207 - GFF4768 0.68 +0.6
7,207 - GFF4768 0.68 -0.4
7,347 + GFF4768 0.75 -0.5
7,347 + GFF4768 0.75 +0.0
7,348 - GFF4768 0.75 -0.6
7,348 - GFF4768 0.75 +0.1
7,381 - GFF4768 0.77 +1.5
7,525 - GFF4768 0.84 +0.2
7,534 + GFF4768 0.84 +0.6
7,534 + GFF4768 0.84 -0.7
7,535 - GFF4768 0.84 -0.8
7,535 - GFF4768 0.84 +0.3
7,535 - GFF4768 0.84 +0.0
7,620 + GFF4768 0.89 -0.5
7,716 + +0.1
7,716 + +0.5
7,716 + +1.0
7,716 + +1.7
7,717 - -0.7
7,717 - -0.1
7,717 - +1.2
7,717 - +0.4
7,871 + -1.2
7,872 - -1.3
8,003 + -0.1
8,004 - -0.3
8,004 - -0.4
8,004 - -0.0
8,015 + -0.2
8,151 + +1.0
8,693 + GFF4769 0.65 -0.2

Or see this region's nucleotide sequence